B9HHU6_POPTR (Populus trichocarpa)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 POPTR_0008s07250 T60742_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s07250.1 S1 17 92

Links

Other S1 family RBPs
Other Populus trichocarpa RBPs

252 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s12507g4t1 Acyrtosiphon pisum DGIL_AUG5s12507g4t1 I 0.737
AAEL013675 Aedes aegypti AAEL013675 I 0.724
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.776
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.750
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.724
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.724
AB05699.1 Alternaria brassicicola AB05699.1 I 0.750
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.750
AGAP011190 Anopheles gambiae AGAP011190 I 0.750
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.763
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.921
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 1.000
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.908
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 1.000
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.750
AGR320W Ashbya gossypii AGR320W I 0.750
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.763
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.763
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.763
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.744
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.763
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.763
72304 Aureococcus anophagefferens 72304 I 0.763
69770 Aureococcus anophagefferens 69770 I 0.763
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.789
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.763
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.763
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.750
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.763
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.868
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.895
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.737
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.737
Bm1_04900 Brugia malayi Bm1_04900 I 0.750
CBN09310 Caenorhabditis brenneri CBN09310 I 0.711
CBN03344 Caenorhabditis brenneri CBN03344 I 0.711
CBG22041 Caenorhabditis briggsae CBG22041 I 0.724
Y37E3.10 Caenorhabditis elegans Y37E3.10 I 0.711
CRE03750 Caenorhabditis remanei CRE03750 I 0.711
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.750
SUI2 Candida albicans orf19.6213 I 0.724
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.724
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.724
PGUG_00485 Candida guilliermondii PGUG_00485 I 0.711
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.737
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.737
CTRG_04191 Candida tropicalis CTRG_04191 I 0.737
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.750
PK10564.1 Cannabis sativa PK10564.1 I 1.000
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.711
CAOG_02542 Capsaspora owczarzaki CAOG_02542 I 0.731
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.750
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.776
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.855
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.829
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.842
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.737
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.724
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.724
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.763
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.763
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.842
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.750
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.763
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.789
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.789
Cucsa.239320 Cucumis sativus Cucsa.239320 I 1.000
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.750
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.750
eif2s1 Danio rerio ENSDARG00000052178 I 0.750
eif2s1l Danio rerio ENSDARG00000005827 I 0.750
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.776
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.737
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.750
GF19374 Drosophila ananassae FBgn0096384 I 0.750
GG19321 Drosophila erecta FBgn0111525 I 0.750
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.750
GI21763 Drosophila mojavensis FBgn0144493 I 0.750
GL20268 Drosophila persimilis FBgn0157863 I 0.750
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.750
GM13399 Drosophila sechellia FBgn0168330 I 0.750
GD15749 Drosophila simulans FBgn0187410 I 0.750
GJ19141 Drosophila virilis FBgn0206286 I 0.750
GK25248 Drosophila willistoni FBgn0227207 I 0.750
GE15968 Drosophila yakuba FBgn0233524 I 0.750
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.750
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.737
LOC100052709 Equus caballus ENSECAG00000018424 I 0.750
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.750
estExt_fgenesh2_kg.C_20112 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_20112 I 0.776
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.750
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.763
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.763
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.750
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.750
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 1.000
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 1.000
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.750
114622 Helobdella robusta 114622 I 0.737
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.776
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.750
EIF2S1 Homo sapiens ENSG00000134001 I 0.750
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.750
ISCW017360 Ixodes scapularis ISCW017360 I 0.737
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.737
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.763
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.763
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.789
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.750
LOAG_09556 Loa loa LOAG_09556 I 0.750
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.737
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.737
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 1.000
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.750
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.750
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.763
EDP42051.1 Malassezia globosa EDP42051.1 I 0.737
MDP0000951954 Malus x domestica MDP0000951954 N 0.855
MDP0000674982 Malus x domestica MDP0000674982 N 0.868
MDP0000663428 Malus x domestica MDP0000663428 I 1.000
MDP0000215901 Malus x domestica MDP0000215901 N 0.711
MDP0000155133 Malus x domestica MDP0000155133 I 0.974
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.987
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.947
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.987
Medtr3g094740 Medicago truncatula Medtr3g094740 I 1.000
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.961
Medtr3g094730 Medicago truncatula Medtr3g094730 I 1.000
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.763
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.750
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.750
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.829
MCYG_00123 Microsporum canis MCYG_00123 I 0.750
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.750
mgf006782m Mimulus guttatus mgf006782m I 0.934
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.750
estExt_fgenesh2_pg.C_150109 Monosiga brevicollis estExt_fgenesh2_pg.C_150109 I 0.711
estExt_Genewise1.C_51162 Mucor circinelloides estExt_Genewise1.C_51162 I 0.737
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.750
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.776
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.763
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.763
fgeneshHS_pg.scaffold_37000098 Naegleria gruberi fgeneshHS_pg.scaffold_37000098 N 0.724
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.763
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.763
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.776
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.776
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.763
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.724
NCU08277 Neurospora crassa NCU08277 I 0.776
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.776
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.776
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.750
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.750
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.750
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.882
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 0.803
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.882
LOC_Os07g49220 Oryza sativa LOC_Os07g49220 I 0.803
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.750
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.816
e_gw1.2.367.1 Ostreococcus RCC809 e_gw1.2.367.1 I 0.763
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.816
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.750
PHUM551010 Pediculus humanus PHUM551010 I 0.763
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.763
PHATRDRAFT_34538 Phaeodactylum tricornutum Phatr34538 I 0.776
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.750
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.789
estExt_Genewise1Plus.C_230113 Phycomyces blakesleeanus estExt_Genewise1Plus.C_230113 I 0.750
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.882
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.895
estExt_fgenesh1_pg.C_210283 Phytophthora capsici estExt_fgenesh1_pg.C_210283 I 0.724
PITG_07885 Phytophthora infestans PITG_07885 I 0.776
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.776
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.750
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.789
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.789
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.776
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.750
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 1.000
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.789
PPA05168 Pristionchus pacificus PPA05168 I 0.711
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.750
ppa008120m Prunus persica ppa008120m I 1.000
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.724
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.750
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.750
RO3G_12494 Rhizopus oryzae RO3G_12494 I 0.737
RO3G_13185 Rhizopus oryzae RO3G_13185 I 0.737
29607.m000238 Ricinus communis 29607.m000238 I 1.000
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.724
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.724
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.724
SUI2 Saccharomyces cerevisiae YJR007W I 0.724
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.711
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.724
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.724
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.789
SPOG_03916 Schizosaccharomyces cryophilus SPOG_03916 I 0.724
SJAG_03629 Schizosaccharomyces japonicus SJAG_03629 I 0.724
SOCG_01617 Schizosaccharomyces octosporus SOCG_01617 I 0.724
tif211 Schizosaccharomyces pombe SPAC3G9.09c I 0.724
SS1G_13048 Sclerotinia sclerotiorum SS1G_13048 I 0.734
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.868
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.776
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.750
SB01G038230 Sorghum bicolor Sb01g038230 I 0.882
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.750
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.776
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.763
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.750
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.711
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.711
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.711
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.711
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.750
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.750
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.750
EIF2S1 Tarsius syrichta ENSTSYG00000014171 I 0.711
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.750
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.763
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.724
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.776
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.724
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.724
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.724
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.750
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.763
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.763
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.763
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.750
TERG_00559 Trichophyton rubrum TERG_00559 I 0.750
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.750
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.750
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.750
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.750
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.763
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.763
UM01463 Ustilago maydis UM01463 I 0.737
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.750
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.763
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.763
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.987
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.855
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.750
AAH46576 Xenopus laevis AAH46576 I 0.750
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.750
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.763
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.882
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.882
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.750