rpb-7 (Caenorhabditis elegans)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 Y54E10BR.6 T60798_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Y54E10BR.6 S1 101 184

Links

Other S1 family RBPs
Other Caenorhabditis elegans RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.762
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.762
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.762
estExt_fgenesh2_pg.C_1620033 Branchiostoma floridae estExt_fgenesh2_pg.C_1620033 N 0.750
estExt_gwp.C_3050025 Branchiostoma floridae estExt_gwp.C_3050025 N 0.750
Bm1_48540 Brugia malayi Bm1_48540 N 0.798
CBN18093 Caenorhabditis brenneri CBN18093 N 0.976
CBG04195 Caenorhabditis briggsae CBG04195 N 0.988
CJA18930 Caenorhabditis japonica CJA18930 N 0.988
CRE30052 Caenorhabditis remanei CRE30052 N 0.976
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.762
POLR2G Canis familiaris ENSCAFG00000015461 N 0.762
estExt_Genewise1Plus.C_2200037 Capitella teleta estExt_Genewise1Plus.C_2200037 N 0.714
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.762
ENSCING00000004991 Ciona intestinalis ENSCING00000004991 N 0.762
ENSCSAVG00000002667 Ciona savignyi ENSCSAVG00000002667 N 0.786
polr2gl Danio rerio ENSDARG00000056127 N 0.762
PASA_GEN_8000031 Daphnia pulex PASA_GEN_8000031 N 0.762
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.762
LOC100063883 Equus caballus ENSECAG00000021465 N 0.762
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.762
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.762
POLR2G Homo sapiens ENSG00000168002 N 0.762
XP_002157143.1 Hydra magnipapillata XP_002157143.1 N 0.762
LOAG_03448 Loa loa LOAG_03448 N 0.845
estExt_Genewise1Plus.C_sca_120103 Lottia gigantea estExt_Genewise1Plus.C_sca_120103 N 0.750
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.762
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.762
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.762
Minc17095 Meloidogyne incognita Minc17095 N 0.774
POLR2G Microcebus murinus ENSMICG00000009967 N 0.750
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.762
Polr2g Mus musculus ENSMUSG00000071662 N 0.762
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.762
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.762
estExt_fgenesh1_pg.C_1060040 Nematostella vectensis estExt_fgenesh1_pg.C_1060040 N 0.738
SNAPOd2T00009931001 Oikopleura dioica SNAPOd2T00009931001 N 0.702
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.762
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.762
POLR2G Oryzias latipes ENSORLG00000003154 N 0.762
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.762
ENSPPYG00000003147 Pongo pygmaeus ENSPPYG00000003147 N 0.762
Ppa-rpb-7 Pristionchus pacificus PPA05219 N 0.729
POLR2G Procavia capensis ENSPCAG00000016408 N 0.762
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.750
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.762
XP_001175728.1 Strongylocentrotus purpuratus XP_001175728.1 N 0.798
XP_001175504.1 Strongylocentrotus purpuratus XP_001175504.1 N 0.798
XP_001176876.1 Strongylocentrotus purpuratus XP_001176876.1 N 0.798
XP_780458.1 Strongylocentrotus purpuratus XP_780458.1 N 0.798
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.762
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.762
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.726
WUBG_12956 Wuchereria bancrofti WUBG_12956 N 0.702
AAI28969 Xenopus laevis AAI28969 N 0.762
polr2g Xenopus tropicalis ENSXETG00000006022 N 0.762