CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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4188_YDR404C
(
Saccharomyces mikatae
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
4188_YDR404C
T61445_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
4188_YDR404C
S1
80
161
KPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIG
Links
Other
S1
family RBPs
Other
Saccharomyces mikatae
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CAGL0F02673g
Candida glabrata
CAGL0F02673g
N
0.988
5333_YDR404C
Saccharomyces bayanus
5333_YDR404C
N
1.000
Scas_Contig632.27
Saccharomyces castellii
Scas_Contig632.27
N
0.976
RPB7
Saccharomyces cerevisiae
YDR404C
N
1.000
Skud_Contig1246.3
Saccharomyces kudriavzevii
Skud_Contig1246.3
N
1.000
5233_YDR404C
Saccharomyces paradoxus
5233_YDR404C
N
1.000
A7TTM8_VANPO
Vanderwaltozyma polyspora
A7TTM8_VANPO
N
0.988
ZYRO0D11726g
Zygosaccharomyces rouxii
ZYRO0D11726g
N
0.988