CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9N817_POPTR
(
Populus trichocarpa
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
POPTR_0018s14670
T62253_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0018s14670.1
YTH
419
509
LLFSVNASGQFCGVAEMVGPVDFEKDADYWQQDRWNGQFPVQWHIIKDVPNSRFRHILLENNDHKPVTHSRDSQEVKLEQGIEMLKIFKDY
Links
Other
YTH
family RBPs
Other
Populus trichocarpa
RBPs
149 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MCYG_07595
Microsporum canis
MCYG_07595
N
0.000
MGYG_05139
Microsporum gypseum
MGYG_05139
N
0.000
TEQG_00100
Trichophyton equinum
TEQG_00100
N
0.000
TERG_02037
Trichophyton rubrum
TERG_02037
N
0.000
TESG_03567
Trichophyton tonsurans
TESG_03567
N
0.000
TRV_04426
Trichophyton verrucosum
TRV_04426
N
0.000