CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Gasterosteus aculeatus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSGACG00000019227
T02711_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000025415
CCCH ZF
19
44
TKNVTCRYFMHGLCKEGDNCRYSHDL
ENSGACP00000025415
CCCH ZF
53
74
ICKFFQKGNCVFGDRCRFDHCK
ENSGACP00000025415
CCCH ZF
156
181
LKKQLCPYAAVGECRYGVNCAYLHGD
ENSGACP00000025415
CCCH ZF
312
339
MGTKPCRYFDEGRGTCPFGSNCFYKHAF
Links
Other
CCCH ZF
family RBPs
Other
Gasterosteus aculeatus
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN1
Tetraodon nigroviridis
ENSTNIG00000007231
N
0.922
NP_001072050.1
Takifugu rubripes
ENSTRUG00000012057
N
0.912
mkrn1
Danio rerio
ENSDARG00000041665
N
0.858
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.849
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.764
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.764
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.757
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.757
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.757
MKRN1
Homo sapiens
ENSG00000133606
N
0.755
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.755
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.755
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.755
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.755
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.755
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.750
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.748
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.745
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.745
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.728
AAH74368
Xenopus laevis
AAH74368
N
0.728
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.726
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.721
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.708
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.708
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.708
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.702