MKRN1 (Gasterosteus aculeatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSGACG00000019227 T02711_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000025415 CCCH ZF 19 44
ENSGACP00000025415 CCCH ZF 53 74
ENSGACP00000025415 CCCH ZF 156 181
ENSGACP00000025415 CCCH ZF 312 339

Links

Other CCCH ZF family RBPs
Other Gasterosteus aculeatus RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MKRN1 Tetraodon nigroviridis ENSTNIG00000007231 N 0.922
NP_001072050.1 Takifugu rubripes ENSTRUG00000012057 N 0.912
mkrn1 Danio rerio ENSDARG00000041665 N 0.858
MKRN1 Oryzias latipes ENSORLG00000012765 N 0.849
MKRN1 Microcebus murinus ENSMICG00000002114 N 0.764
Mkrn1 Mus musculus ENSMUSG00000029922 N 0.764
MKRN1 Anolis carolinensis ENSACAG00000010934 N 0.757
ENSMODG00000013686 Monodelphis domestica ENSMODG00000013686 N 0.757
MKRN1_MACEU Macropus eugenii ENSMEUG00000007399 N 0.757
MKRN1 Homo sapiens ENSG00000133606 N 0.755
MKRN1 Tursiops truncatus ENSTTRG00000009528 N 0.755
MKRN1 Choloepus hoffmanni ENSCHOG00000011015 N 0.755
MKRN1 Sus scrofa ENSSSCG00000016498 N 0.755
Q68FR1_RAT Rattus norvegicus ENSRNOG00000009280 N 0.755
ENSGGOG00000023977 Gorilla gorilla ENSGGOG00000023977 N 0.755
MKRN1 Ochotona princeps ENSOPRG00000010353 N 0.750
Q9PTI4_CHICK Gallus gallus ENSGALG00000012852 N 0.748
XR_024878.1 Pan troglodytes ENSPTRG00000019766 N 0.745
MKRN1 Loxodonta africana ENSLAFG00000018408 N 0.745
Q6GLT5 Xenopus laevis Q6GLT5 N 0.728
AAH74368 Xenopus laevis AAH74368 N 0.728
ENSCPOG00000000948 Cavia porcellus ENSCPOG00000000948 N 0.726
ENSPPYG00000020255 Pongo pygmaeus ENSPPYG00000020255 N 0.721
LOC100065893 Equus caballus ENSECAG00000017929 N 0.708
Ame_R001963 Ailuropoda melanoleuca Ame_R001963 N 0.708
MKRN1 Macaca mulatta ENSMMUG00000010420 N 0.708
MKRN1 Procavia capensis ENSPCAG00000014683 N 0.702