CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSVPAG00000003865
(
Vicugna pacos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSVPAG00000003865
T42729_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000003589
RRM
36
104
IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF
ENSVPAP00000003589
RRM
128
197
VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY
ENSVPAP00000003589
RRM
231
299
LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
Links
Other
RRM
family RBPs
Other
Vicugna pacos
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCPOG00000012917
Cavia porcellus
ENSCPOG00000012917
N
1.000
Q2VIP1_9PRIM
Gorilla gorilla
ENSGGOG00000006785
I
1.000
Q5ZL53_CHICK
Gallus gallus
ENSGALG00000014450
N
0.995
ENSMGAG00000012239
Meleagris gallopavo
ENSMGAG00000012239
N
0.990
ENSEEUG00000002701
Erinaceus europaeus
ENSEEUG00000002701
N
0.952
ENSDNOG00000008718
Dasypus novemcinctus
ENSDNOG00000008718
N
0.947
ENSMGAG00000005408
Meleagris gallopavo
ENSMGAG00000005408
N
0.865
Pabpc1
Dipodomys ordii
ENSDORG00000013935
N
0.861
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.861
PABPC4
Sorex araneus
ENSSARG00000000310
N
0.851
PABPC4
Choloepus hoffmanni
ENSCHOG00000005327
N
0.851
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.851
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.846
ENSSARG00000004448
Sorex araneus
ENSSARG00000004448
N
0.808
ENSETEG00000002793
Echinops telfairi
ENSETEG00000002793
N
0.803
ENSSTOG00000016395
Spermophilus tridecemlineatus
ENSSTOG00000016395
N
0.769