CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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aret_CONSTRUCT
(
RNAcompete CONSTRUCTS
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
aret_CONSTRUCT
T48469_0.6
Hughes Lab (2012-Nov-13)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret_CONSTRUCT
M229_0.6
RNAcompete CONSTRUCTS
UKUGUGU
RNAcompete
Ray et al.(2013)
RNCMPT00270
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M229_0.6
RRM
16
86
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
aret_CONSTRUCT
RRM
16
86
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
Links
Other
RRM
family RBPs
Other
RNAcompete CONSTRUCTS
RBPs
0 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
No related RBP found