CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

gw1.219.6.1_CONSTRUCT *(RNAcompete CONSTRUCTS)* RRM
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00076 (RRM_1)	IPR000504	gw1.219.6.1_CONSTRUCT	T48472_0.6	Hughes Lab (2012-Nov-13)
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
gw1.219.6.1_CONSTRUCT M199_0.6	RNAcompete CONSTRUCTS		UGUUUUD	RNAcompete Ray et al.(2013) RNCMPT00229	(Direct)
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
No RBPs with similar RNA binding domains

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M199_0.6	RRM	10	79	LWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHAAAEKILQAYNGTQMPNTEQ
M199_0.6	RRM	103	174	IFVGDLAPDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMNGVYCSSRPMR
M199_0.6	RRM	224	288	IFVGGLDPAVGDEDLRNVFGQFGELVYVKIPAGKGCGFVQFTHRACAEEALQRLHQTVIGTQAVR

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
gw1.219.6.1_CONSTRUCT	RRM	10	79	LWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHAAAEKILQAYNGTQMPNTEQ
gw1.219.6.1_CONSTRUCT	RRM	103	174	IFVGDLAPDVTDYMLQETFRTRYPSVKGAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMNGVYCSSRPMR
gw1.219.6.1_CONSTRUCT	RRM	224	288	IFVGGLDPAVGDEDLRNVFGQFGELVYVKIPAGKGCGFVQFTHRACAEEALQRLHQTVIGTQAVR

Links
Other RRM family RBPs
Other *RNAcompete CONSTRUCTS* RBPs

0 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
No related RBP found