29842.m003612 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29842.m003612 T48696_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29842.m003612 RRM 91 160
29842.m003612 RRM 183 254
29842.m003612 RRM 292 356

Links

Other RRM family RBPs
Other Ricinus communis RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.879
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.845
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.845
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.826
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.826
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.821
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.812
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.808
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.803
mgf014417m Mimulus guttatus mgf014417m N 0.798
PK10695.1 Cannabis sativa PK10695.1 I 0.793
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.792
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.792
MDP0000294628 Malus x domestica MDP0000294628 I 0.784
ppa006617m Prunus persica ppa006617m N 0.774
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.760
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.760
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.760
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.760
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.760
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.758
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.754
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.750
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.750
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.749
29666.m001436 Ricinus communis 29666.m001436 I 0.745
mgf010468m Mimulus guttatus mgf010468m I 0.745
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.744
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.740
ppa006577m Prunus persica ppa006577m I 0.740
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.739
MDP0000223369 Malus x domestica MDP0000223369 N 0.736
MDP0000614064 Malus x domestica MDP0000614064 N 0.736
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.726
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.721
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.720
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.710
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.710
SB01G016170 Sorghum bicolor Sb01g016170 N 0.705
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.705