Species Num Motifs Total Direct Total Inferred Total RBPs Pct RBPs Species Name Kingdom
RNAcompete_CONSTRUCTS1313013100.0_ERR_
Xenopus_laevis300229862248.2African clawed frogMetazoa
Callithrix_jacchus221022147047.0Common marmosetMetazoa
Canis_familiaris202020243146.9DogMetazoa
Rattus_norvegicus206020644346.5RatMetazoa
Pan_troglodytes156015635743.7ChimpanzeeMetazoa
Homo_sapiens1671006739242.6HumanMetazoa
Mus_musculus154714737341.3MouseMetazoa
Gorilla_gorilla153015337141.2GorillaMetazoa
Macaca_mulatta157015738740.6Rhesus macaqueMetazoa
Oryctolagus_cuniculus156015638840.2RabbitMetazoa
Pongo_pygmaeus140014034840.2Bornean orangutanMetazoa
Monodelphis_domestica147014737339.4Short-tailed gray opossumMetazoa
Equus_caballus124012432038.8HorseMetazoa
Bos_taurus142014237138.3BovineMetazoa
Loxodonta_africana131013134438.1African elephantMetazoa
Pteropus_vampyrus117011730838.0Large flying foxMetazoa
Cavia_porcellus133013335038.0Guinea pigMetazoa
Tursiops_truncatus117011730937.9Atlantic bottle-nosed dolphinMetazoa
Sus_scrofa108010828937.4PigMetazoa
Takifugu_rubripes137013736837.2PufferfishMetazoa
Ailuropoda_melanoleuca126012634736.3PandaMetazoa
Gasterosteus_aculeatus141014139435.8Three-spined sticklebackMetazoa
Oryzias_latipes127012736634.7Medaka fishMetazoa
Tetraodon_nigroviridis125212336234.5Green pufferMetazoa
Gallus_gallus9339027533.8ChickenMetazoa
Danio_rerio145514043433.4ZebrafishMetazoa
Anolis_carolinensis111011133433.2Green anoleMetazoa
Vicugna_pacos7507522832.9AlpacaMetazoa
Taeniopygia_guttata9609629432.7Zebra finchMetazoa
Xenopus_tropicalis10349931732.5Western clawed frogMetazoa
Dipodomys_ordii8508527031.5Ords kangaroo ratMetazoa
Ornithorhynchus_anatinus8208226131.4Duckbill platypusMetazoa
Microcebus_murinus8208226231.3Lesser mouse lemurMetazoa
Ochotona_princeps8408427230.9Southern American pikaMetazoa
Tarsius_syrichta7307324330.0Philippine tarsierMetazoa
Macropus_eugenii7807826629.3Tammar wallabyMetazoa
Procavia_capensis8108127729.2Cape hyraxMetazoa
Meleagris_gallopavo8008027429.2TurkeyMetazoa
Sorex_araneus6906923928.9Eurasian common shrewMetazoa
Erinaceus_europaeus6806824028.3Western European hedgehogMetazoa
Dasypus_novemcinctus6706724027.9Nine-banded armadilloMetazoa
Myotis_lucifugus9109132727.8Little brown batMetazoa
Echinops_telfairi8308330027.7Lesser hedgehog tenrecMetazoa
Tupaia_belangeri7107126027.3Northern treeshrewMetazoa
Otolemur_garnettii6306323327.0Small-eared galagoMetazoa
Drosophila_melanogaster6052822426.8Fruit flyMetazoa
Drosophila_mojavensis5105119526.2D. mojavensis (fruit fly)Metazoa
Spermophilus_tridecemlineatus6406424526.1Thirteen-lined ground squirrelMetazoa
Drosophila_yakuba5205220325.6D. yakuba (fruit fly)Metazoa
Drosophila_ananassae5005019625.5D. ananassae (fruit fly)Metazoa
Choloepus_hoffmanni5805823225.0Hoffmanns two-fingered slothMetazoa
Drosophila_sechellia5005020724.2D. sechellia (fruit fly)Metazoa
Drosophila_virilis4704719624.0D. virilis (fruit fly)Metazoa
Drosophila_erecta4804820123.9D. erecta (fruit fly)Metazoa
Drosophila_grimshawi4604619823.2D. grimshawi (fruit fly)Metazoa
Drosophila_willistoni4904921323.0D. willistoni (fruit fly)Metazoa
Drosophila_persimilis4004017922.3D. persimilis (fruit fly)Metazoa
Apis_mellifera4504520322.2Honey beeMetazoa
Drosophila_simulans4204219022.1D. simulans (fruit fly)Metazoa
Drosophila_pseudoobscura4604620922.0Fruit flyMetazoa
Felis_catus5005022821.9CatMetazoa
Pediculus_humanus3403418018.9Head louseMetazoa
Anopheles_gambiae3603620917.2Mosquito (seven types)Metazoa
Aedes_aegypti4204224816.9Yellowfever mosquitoMetazoa
Branchiostoma_floridae5805841314.0Florida lancelet (fish)Metazoa
Culex_quinquefasciatus3503526113.4C. quinquefasciatus (mosquito)Metazoa
Caenorhabditis_elegans28151321113.3C. elegansMetazoa
Capitella_teleta4604634813.2Segmented wormMetazoa
Caenorhabditis_brenneri3003023212.9C. brenneri (nematode)Metazoa
Bombyx_mori2602620312.8Silk mothMetazoa
Ciona_savignyi2002015812.7Pacific transparent sea squirtMetazoa
Ciona_intestinalis2102118011.7Transparent sea squirtMetazoa
Tribolium_castaneum3032611.5BeetleMetazoa
Saccharomyces_castellii8087510.7S. castelliiFungi
Culex_pipiens3403432210.6C. pipiens (mosquito)Metazoa
Ixodes_scapularis2102120210.4Deer tickMetazoa
Candida_glabrata9098710.3Human pathogen (fungus)Fungi
Zygosaccharomyces_rouxii808839.6Z. rouxiiFungi
Saccharomyces_cerevisiae981959.5Bakers yeastFungi
Trypanosoma_brucei13671389.4Trypanosoma bruceiProtists
Caenorhabditis_briggsae240242589.3C. briggsaeMetazoa
Lottia_gigantea280283009.3Owl limpet (sea snail)Metazoa
Strongylocentrotus_purpuratus500505539.0Sea urchinMetazoa
Acyrtosiphon_pisum330333798.7Pea aphidMetazoa
Trichoplax_adhaerens140141628.6Placozoan (simple animal)Metazoa
Vanderwaltozyma_polyspora808958.4Yeast: post-WGD lineage most divergent from cerevisiaeFungi
Nematostella_vectensis231222838.1Starlet sea anemoneMetazoa
Saccharomyces_paradoxus707897.9S. paradoxus (yeast)Fungi
Lachancea_kluyveri707897.9L. kluyveri (budding yeast)Fungi
Kluyveromyces_lactis606777.8YeastFungi
Plasmodium_falciparum8801037.8MalariaProtists
Plasmodium_chabaudi8081027.8Protist (animal parasite)Protists
Saccharomyces_bayanus707917.7S. bayanus (yeast)Fungi
Saccharomyces_mikatae707927.6S. mikatae (yeast)Fungi
Plasmodium_berghei7071007.0Protist (animal parasite)Protists
Daphnia_pulex320324686.8Water fleaMetazoa
Plasmodium_vivax7071046.7Protist (animal parasite)Protists
Helobdella_robusta270274016.7LeechMetazoa
Kluyveromyces_thermotolerans606896.7K. thermotoleransFungi
Loa_loa130131986.6L. loa (nematode)Metazoa
Nasonia_vitripennis370375586.6Parasitoid waspMetazoa
Plasmodium_knowlesi7071086.5Protist (animal parasite)Protists
Caenorhabditis_remanei230233576.4C. remanei (nematode)Metazoa
Schistosoma_mansoni131122106.2Blood flukeMetazoa
Brugia_malayi110111826.0B. malayi (nematode)Metazoa
Ashbya_gossypii505846.0Plant pathogen (fungus)Fungi
Kluyveromyces_waltii505925.4K. waltii (yeast)Fungi
Trypanosoma_congolense8081475.4Protist (animal parasite)Protists
Cucumis_sativus170173195.3CucumberPlants
Caenorhabditis_japonica190193575.3C. japonica (nematode)Metazoa
Plasmodium_yoelii505965.2Protist (animal parasite)Protists
Cryphonectria_parasitica505995.1Chestnut blight fungusFungi
Trichoderma_reesei505985.1Hypocrea jecorinaFungi
Magnaporthe_oryzae5051005.0Magnaporthe grisea, rice blast fungus, many othersFungi
Trichoderma_virens5051015.0Plant beneficial fungusFungi
Nectria_haematococca5051015.0Fusarium solani Fungi
Glycine_max410418185.0SoybeanPlants
Colletotrichum_graminicola5051034.9Glomerella graminicola, causes plant cankers (anthracnose) on maize anFungi
Wuchereria_bancrofti110112254.9W. bancrofti (nematode)Metazoa
Leishmania_braziliensis7071464.8Protist (human parasite)Protists
Leishmania_mexicana7071454.8Protist (human parasite)Protists
Manihot_esculenta420428744.8Cassava (woody shrub)Plants
Ricinus_communis170173534.8Castor oil plantPlants
Meloidogyne_incognita150153164.7Southern root-knot nematodeMetazoa
Myceliophthora_thermophila5051064.7Thielavia heterothallicaFungi
Leishmania_major7431494.7Leishmania majorProtists
Podospora_anserina5051084.6Filamentous fungusFungi
Neurospora_tetrasperma5051094.6MoldFungi
Blastomyces_dermatitidis5051124.5Causes blastomycosisFungi
Thielavia_terrestris5051104.5Thermophilic fungus related to NerosporaFungi
Neurospora_crassa5231154.3Neurospora crassaFungi
Amphimedon_queenslandica140143294.3SpongeMetazoa
Hydra_magnipapillata120122774.3Fresh water polpMetazoa
Prunus_persica200204794.2Peach treePlants
Verticillium_dahliae404954.2Causes verticillium wiltFungi
Populus_trichocarpa270276514.1Black cottonwood/california poplarPlants
Uncinocarpus_reesii404974.1Related to Coccidioides, the cause of CoccidiomycosisFungi
Vitis_vinifera160163864.1Common Grape VinePlants
Leishmania_infantum6061484.1Protist (human parasite)Protists
Trichophyton_tonsurans404984.1Cause of Tinea capitis (scalp ringworm)Fungi
Chaetomium_globosum5051244.0Mold allergenFungi
Ostreococcus_tauri5231254.0Green algaeAlga
Trichoderma_atroviride4041014.0Cold tollerant, hyperparasiteFungi
Fusarium_verticillioides4041014.0Gibberella fujikuroi, cause of bakanae disease in riceFungi
Aspergillus_fumigatus404994.0Cause of aspergillosisFungi
Aspergillus_carbonarius4041004.0Black spore moldFungi
Physcomitrella_patens133103453.8MossPlants
Fusarium_oxysporum4041043.8Need subspecies, but soil microbe digesting ligninFungi
Histoplasma_capsulatum4041063.8Histoplasma capsulatumFungi
Neosartorya_fischeri4041043.8Fungal pathogen (related to Aspergillus)Fungi
Neurospora_discreta4041063.8MoldFungi
Coccidioides_immitis4041043.8Cause of Valley FeverFungi
Trypanosoma_cruzi5051333.8Trypanosoma cruziProtists
Trypanosoma_vivax5051333.8Protist (animal parasite)Protists
Alternaria_brassicicola4041053.8Plant pathogen (brassica dark leaf spot)Fungi
Medicago_truncatula150153983.8Barrel Clover (legume)Plants
Aspergillus_nidulans4221073.7AspergillusFungi
Cannabis_sativa140143833.7MarijuanaPlants
Aspergillus_clavatus4041093.7AspergillusFungi
Cochliobolus_heterostrophus_C54041143.5Southern Corn Leaf BlightFungi
Stagonospora_nodorum4041153.5Septoria nodorum, pathogen of wheat and related cereals, cause of glumFungi
Penicillium_marneffei4041193.4Mold- cause of penicilliosis Fungi
Oikopleura_dioica100102983.4TunicateMetazoa
Zea_mays190195533.4MaizePlants
Saccharomyces_kudriavzevii202583.4S. kudriavzeviiFungi
Schistosoma_japonicum7072113.3Blood flukeMetazoa
Pristionchus_pacificus8082453.3P. pacificus (nematode)Metazoa
Trichophyton_verrucosum303903.3Cow ringwormFungi
Mycosphaerella_fijiensis303943.2Black sigatokaFungi
Arthroderma_benhamiae303953.2RingwormFungi
Selaginella_moellendorfii9092843.2SpikemossPlants
Mycosphaerella_graminicola303983.1Wheat pathogenFungi
Aspergillus_flavus303973.1AspergillusFungi
Aspergillus_terreus3031013.0Aspergillus terreusFungi
Trichophyton_equinum3031003.0Horse ringwormFungi
Brachypodium_distachyon130134403.0Purple false brome (grass)Plants
Pyrenophora_tritici_repentis4041323.0Cause of tan spotFungi
Microsporum_canis3031022.9Cause of Tinea capitis (scalp ringworm)Fungi
Ostreococcus_RCC8094041372.9Single-celled algaAlga
Microsporum_gypseum3031052.9Mold, may cause ringwormFungi
Mimulus_guttatus140144842.9Common monkey flowerPlants
Schizophyllum_commune4041442.8Split Gill Fungi
Phaeosphaeria_nodorum3031082.8Glume blotch fungusFungi
Trichophyton_rubrum3031062.8Athletes foot, jock itch, ringwormFungi
Malus_x_domestica250259382.7Domesticated applePlants
Coccidioides_posadasii3031132.7Cause of Valley FeverFungi
Arabidopsis_lyrata140145192.7MustardPlants
Fusarium_graminearum3031112.7Gibberella zeae, cause of wheat headblightFungi
Tuber_melanosporum3031252.4Black truffleFungi
Spizellomyces_punctatus4041642.4Fungus with weird mitochondrial genomeFungi
Botrytis_cinerea3031252.4Botrytis cinereaFungi
Trichomonas_vaginalis5502082.4Trichomonas vaginalisProtists
Verticillium_albo_atrum202872.3Plant pathogen targeting: hops, alfalfa, cottonFungi
Ostreococcus_lucimarinus3031302.3Single-celled algaAlga
Arabidopsis_thaliana131125592.3Mouse-ear cressPlants
Aureococcus_anophagefferens3031352.2Brown tide bloomsAlga
Rhizopus_oryzae6152752.2Rhizopus oryzaeFungi
Sorghum_bicolor120125382.2Sorghum (drought-tolerant African grass)Plants
Mucor_circinelloides4041842.2Cause of zygomycosisFungi
Chlorella_vulgaris3031392.2Green algaeAlga
Salpingoeca_rosetta3031432.1ChoanoflagellateProtists
Pleurotus_ostreatus3031402.1Oyster mushroomFungi
Oryza_indica100104812.1RicePlants
Paracoccidioides_brasiliensis2021022.0Cause of paracoccidioidomycosisFungi
Phycomyces_blakesleeanus4042032.0Algal fungiFungi
Laccaria_bicolor3031472.0Deceiver (small tan colored mushroom)Fungi
Sclerotinia_sclerotiorum3031522.0Pathogenic fungus, causes fuzzy growths on plantsFungi
Polysphondylium_pallidum3031512.0Cellular slime moldProtists
Ustilago_maydis2021071.9Corn smutFungi
Aspergillus_oryzae2021071.9Koji mold (makes sake)Fungi
Aspergillus_niger2021051.9Aspergillus (black mold)Fungi
Schizosaccharomyces_octosporus2021101.8Fission yeastFungi
Chlorella_NC64A3031661.8MicroalgaeAlga
Phanerochaete_chrysosporium3031631.8"White rot", crust fungusFungi
Lotus_japonicus100105521.8Wild legumePlants
Penicillium_chrysogenum2021101.8MoldFungi
Monosiga_brevicollis2021261.6ChoanoflagellateProtists
Allomyces_macrogynus4042491.6Zoosporic fungusFungi
Agaricus_bisporus3031881.6Common (button) mushroomFungi
Batrachochytrium_dendrobatidis2021221.6Chytrid targetting amphibiansFungi
Cryptosporidium_hominis101671.5Protist (human parasite)Protists
Capsaspora_owczarzaki2021311.5Protist (snail symbiont)Protists
Pneumocystis_carinii3032051.5Form of pneumoniaFungi
Dictyostelium_purpureum2021351.5Slime moldProtists
Thalassiosira_pseudonana2111421.4Marine diatomAlga
Coprinopsis_cinerea2021381.4Inky cap mushroomFungi
Coccomyxa_C_1692021441.4Green algaeAlga
Dictyostelium_discoideum2021381.4Slime moldProtists
Chlamydomonas_reinhardtii2021451.4ChlamydomonasAlga
Phytophthora_capsici2021571.3Plant pathogenProtists
Melampsora_laricis_populina2021521.3Leaf rust fungusFungi
Cryptosporidium_parvum101771.3Cryptosporidium parvumProtists
Candida_lusitaniae101821.2YeastFungi
Candida_guilliermondii101821.2YeastFungi
Pichia_pastoris101841.2YeastFungi
Malassezia_globosa101851.2Yeast (human symbiont)Fungi
Pichia_stipitis101851.2Yeast related to cerevisiaeFungi
Candida_parapsilosis101851.2YeastFungi
Candida_dubliniensis101921.1Fungal pathogenFungi
Lodderomyces_elongisporus101921.1YeastFungi
Postia_placenta3032611.1Brown rot fungusFungi
Candida_tropicalis101901.1YeastFungi
Sporobolomyces_roseus101901.1Red yeast, related to rusts and smutsFungi
Candida_albicans101931.1YeastFungi
Micromonas_pusilla2021821.1Flagellar marine algaeAlga
Serpula_lacrymans3032661.1Fungus (cause of dry rot)Fungi
Phytophthora_infestans2021751.1Potato blight water moldProtists
Phoenix_dactylifera4043881.0True date palmPlants
Yarrowia_lipolytica1011021.0YeastFungi
Naegleria_gruberi1101011.0AmoebaProtists
Debaryomyces_hansenii101961.0Salt loving yeastFungi
Schizosaccharomyces_pombe1011130.9Fission yeastFungi
Schizosaccharomyces_japonicus1011160.9Fission yeastFungi
Schizosaccharomyces_cryophilus1011120.9Fission yeastFungi
Tremella_mesenterica2022320.9Golden jelly fungusFungi
Phytophthora_ramorum2112650.8Sudden Oak DeathProtists
Toxoplasma_gondii3033930.8Toxoplasma gondiiProtists
Phaeodactylum_tricornutum1011190.8DiatomAlga
Thecamonas_trahens1011290.8Gliding zooflagellateProtists
Oryza_sativa1701724200.7RicePlants
Neospora_caninum1011380.7Protist (animal parasite)Protists
Volvox_carteri1011780.6VolvoxAlga
Saprolegnia_parasitica1011740.6Water moldProtists
Heterobasidion_annosum1011690.6Annosum root rotFungi
Fragilariopsis_cylindrus1011570.6Planktonic diatom, grows on iceAlga
Emiliania_huxleyi2023910.5EHUXAlga
Phytophthora_sojae1013410.3Soybean stem and root rotProtists
Giardia_lamblia000360.0Giardia lambliaProtists
Cryptosporidium_muris000850.0Protist (human parasite)Protists
Paramecium_tetraurelia0004240.0CiliateProtists
Bigelowiella_natans00060.0Chlorarachniophyte algal symbiontAlga
Cyanidioschyzon_merolae000520.0Red algaAlga
Puccinia_graminis0002620.0Stem rustFungi
Puccinia_triticina0003030.0Wheat leaf rustFungi
Moniliophthora_perniciosa000820.0Plant pathogenFungi
Babesia_bovis000880.0Cattle ParasiteProtists
Theileria_annulata000860.0Cattle ParasiteProtists
Theileria_parva000820.0Cattle ParasiteProtists
Guillardia_theta00070.0CryptomonadProtists
Tetrahymena_thermophila0002130.0CiliateProtists
Hemiselmis_andersenii00070.0Nucleomorph (remnant of an algal sybiont)Alga
Enterocytozoon_bieneusi000580.0MicrosporidiaFungi
Entamoeba_invadens0001480.0Entamoeba (animal parasite)Protists
Entamoeba_histolytica0001160.0Entamoeba (animal parasite)Protists
Entamoeba_dispar0001200.0Entamoeba (animal parasite)Protists
Encephalitozoon_intestinalis000410.0Protist (human parasite); smallest known genomeFungi
Cryptococcus_neoformans0001070.0Cryptococcus neoformansFungi
Encephalitozoon_cuniculi000410.0Encephalitozoon cuniculiFungi