| Species |
Num Motifs |
Total Direct |
Total Inferred |
Total RBPs |
Pct RBPs |
Species Name |
Kingdom |
|---|
| Homo_sapiens | 167 | 100 | 67 | 392 | 42.6 | Human | Metazoa |
| Drosophila_melanogaster | 60 | 52 | 8 | 224 | 26.8 | Fruit fly | Metazoa |
| Caenorhabditis_elegans | 28 | 15 | 13 | 211 | 13.3 | C. elegans | Metazoa |
| RNAcompete_CONSTRUCTS | 13 | 13 | 0 | 13 | 100.0 | _ERR_ | |
| Saccharomyces_cerevisiae | 9 | 8 | 1 | 95 | 9.5 | Bakers yeast | Fungi |
| Plasmodium_falciparum | 8 | 8 | 0 | 103 | 7.8 | Malaria | Protists |
| Mus_musculus | 154 | 7 | 147 | 373 | 41.3 | Mouse | Metazoa |
| Trypanosoma_brucei | 13 | 6 | 7 | 138 | 9.4 | Trypanosoma brucei | Protists |
| Trichomonas_vaginalis | 5 | 5 | 0 | 208 | 2.4 | Trichomonas vaginalis | Protists |
| Danio_rerio | 145 | 5 | 140 | 434 | 33.4 | Zebrafish | Metazoa |
| Xenopus_tropicalis | 103 | 4 | 99 | 317 | 32.5 | Western clawed frog | Metazoa |
| Leishmania_major | 7 | 4 | 3 | 149 | 4.7 | Leishmania major | Protists |
| Gallus_gallus | 93 | 3 | 90 | 275 | 33.8 | Chicken | Metazoa |
| Physcomitrella_patens | 13 | 3 | 10 | 345 | 3.8 | Moss | Plants |
| Aspergillus_nidulans | 4 | 2 | 2 | 107 | 3.7 | Aspergillus | Fungi |
| Tetraodon_nigroviridis | 125 | 2 | 123 | 362 | 34.5 | Green puffer | Metazoa |
| Neurospora_crassa | 5 | 2 | 3 | 115 | 4.3 | Neurospora crassa | Fungi |
| Ostreococcus_tauri | 5 | 2 | 3 | 125 | 4.0 | Green algae | Alga |
| Xenopus_laevis | 300 | 2 | 298 | 622 | 48.2 | African clawed frog | Metazoa |
| Rhizopus_oryzae | 6 | 1 | 5 | 275 | 2.2 | Rhizopus oryzae | Fungi |
| Schistosoma_mansoni | 13 | 1 | 12 | 210 | 6.2 | Blood fluke | Metazoa |
| Arabidopsis_thaliana | 13 | 1 | 12 | 559 | 2.3 | Mouse-ear cress | Plants |
| Phytophthora_ramorum | 2 | 1 | 1 | 265 | 0.8 | Sudden Oak Death | Protists |
| Thalassiosira_pseudonana | 2 | 1 | 1 | 142 | 1.4 | Marine diatom | Alga |
| Naegleria_gruberi | 1 | 1 | 0 | 101 | 1.0 | Amoeba | Protists |
| Nematostella_vectensis | 23 | 1 | 22 | 283 | 8.1 | Starlet sea anemone | Metazoa |
| Phytophthora_infestans | 2 | 0 | 2 | 175 | 1.1 | Potato blight water mold | Protists |
| Pichia_stipitis | 1 | 0 | 1 | 85 | 1.2 | Yeast related to cerevisiae | Fungi |
| Pichia_pastoris | 1 | 0 | 1 | 84 | 1.2 | Yeast | Fungi |
| Phytophthora_sojae | 1 | 0 | 1 | 341 | 0.3 | Soybean stem and root rot | Protists |
| Phoenix_dactylifera | 4 | 0 | 4 | 388 | 1.0 | True date palm | Plants |
| Phycomyces_blakesleeanus | 4 | 0 | 4 | 203 | 2.0 | Algal fungi | Fungi |
| Procavia_capensis | 81 | 0 | 81 | 277 | 29.2 | Cape hyrax | Metazoa |
| Phytophthora_capsici | 2 | 0 | 2 | 157 | 1.3 | Plant pathogen | Protists |
| Polysphondylium_pallidum | 3 | 0 | 3 | 151 | 2.0 | Cellular slime mold | Protists |
| Postia_placenta | 3 | 0 | 3 | 261 | 1.1 | Brown rot fungus | Fungi |
| Plasmodium_berghei | 7 | 0 | 7 | 100 | 7.0 | Protist (animal parasite) | Protists |
| Podospora_anserina | 5 | 0 | 5 | 108 | 4.6 | Filamentous fungus | Fungi |
| Pneumocystis_carinii | 3 | 0 | 3 | 205 | 1.5 | Form of pneumonia | Fungi |
| Pongo_pygmaeus | 140 | 0 | 140 | 348 | 40.2 | Bornean orangutan | Metazoa |
| Pleurotus_ostreatus | 3 | 0 | 3 | 140 | 2.1 | Oyster mushroom | Fungi |
| Pristionchus_pacificus | 8 | 0 | 8 | 245 | 3.3 | P. pacificus (nematode) | Metazoa |
| Plasmodium_vivax | 7 | 0 | 7 | 104 | 6.7 | Protist (animal parasite) | Protists |
| Plasmodium_knowlesi | 7 | 0 | 7 | 108 | 6.5 | Protist (animal parasite) | Protists |
| Plasmodium_yoelii | 5 | 0 | 5 | 96 | 5.2 | Protist (animal parasite) | Protists |
| Populus_trichocarpa | 27 | 0 | 27 | 651 | 4.1 | Black cottonwood/california poplar | Plants |
| Plasmodium_chabaudi | 8 | 0 | 8 | 102 | 7.8 | Protist (animal parasite) | Protists |
| Prunus_persica | 20 | 0 | 20 | 479 | 4.2 | Peach tree | Plants |
| Phanerochaete_chrysosporium | 3 | 0 | 3 | 163 | 1.8 | "White rot", crust fungus | Fungi |
| Phaeosphaeria_nodorum | 3 | 0 | 3 | 108 | 2.8 | Glume blotch fungus | Fungi |
| Ochotona_princeps | 84 | 0 | 84 | 272 | 30.9 | Southern American pika | Metazoa |
| Neurospora_tetrasperma | 5 | 0 | 5 | 109 | 4.6 | Mold | Fungi |
| Neurospora_discreta | 4 | 0 | 4 | 106 | 3.8 | Mold | Fungi |
| Neospora_caninum | 1 | 0 | 1 | 138 | 0.7 | Protist (animal parasite) | Protists |
| Neosartorya_fischeri | 4 | 0 | 4 | 104 | 3.8 | Fungal pathogen (related to Aspergillus) | Fungi |
| Nectria_haematococca | 5 | 0 | 5 | 101 | 5.0 | Fusarium solani | Fungi |
| Nasonia_vitripennis | 37 | 0 | 37 | 558 | 6.6 | Parasitoid wasp | Metazoa |
| Myotis_lucifugus | 91 | 0 | 91 | 327 | 27.8 | Little brown bat | Metazoa |
| Mycosphaerella_graminicola | 3 | 0 | 3 | 98 | 3.1 | Wheat pathogen | Fungi |
| Mycosphaerella_fijiensis | 3 | 0 | 3 | 94 | 3.2 | Black sigatoka | Fungi |
| Myceliophthora_thermophila | 5 | 0 | 5 | 106 | 4.7 | Thielavia heterothallica | Fungi |
| Mucor_circinelloides | 4 | 0 | 4 | 184 | 2.2 | Cause of zygomycosis | Fungi |
| Monosiga_brevicollis | 2 | 0 | 2 | 126 | 1.6 | Choanoflagellate | Protists |
| Monodelphis_domestica | 147 | 0 | 147 | 373 | 39.4 | Short-tailed gray opossum | Metazoa |
| Oikopleura_dioica | 10 | 0 | 10 | 298 | 3.4 | Tunicate | Metazoa |
| Ornithorhynchus_anatinus | 82 | 0 | 82 | 261 | 31.4 | Duckbill platypus | Metazoa |
| Phaeodactylum_tricornutum | 1 | 0 | 1 | 119 | 0.8 | Diatom | Alga |
| Penicillium_marneffei | 4 | 0 | 4 | 119 | 3.4 | Mold- cause of penicilliosis | Fungi |
| Penicillium_chrysogenum | 2 | 0 | 2 | 110 | 1.8 | Mold | Fungi |
| Pediculus_humanus | 34 | 0 | 34 | 180 | 18.9 | Head louse | Metazoa |
| Paramecium_tetraurelia | 0 | 0 | 0 | 424 | 0.0 | Ciliate | Protists |
| Oryza_sativa | 17 | 0 | 17 | 2420 | 0.7 | Rice | Plants |
| Paracoccidioides_brasiliensis | 2 | 0 | 2 | 102 | 2.0 | Cause of paracoccidioidomycosis | Fungi |
| Pan_troglodytes | 156 | 0 | 156 | 357 | 43.7 | Chimpanzee | Metazoa |
| Otolemur_garnettii | 63 | 0 | 63 | 233 | 27.0 | Small-eared galago | Metazoa |
| Ostreococcus_RCC809 | 4 | 0 | 4 | 137 | 2.9 | Single-celled alga | Alga |
| Ostreococcus_lucimarinus | 3 | 0 | 3 | 130 | 2.3 | Single-celled alga | Alga |
| Oryzias_latipes | 127 | 0 | 127 | 366 | 34.7 | Medaka fish | Metazoa |
| Oryza_indica | 10 | 0 | 10 | 481 | 2.1 | Rice | Plants |
| Oryctolagus_cuniculus | 156 | 0 | 156 | 388 | 40.2 | Rabbit | Metazoa |
| Moniliophthora_perniciosa | 0 | 0 | 0 | 82 | 0.0 | Plant pathogen | Fungi |
| Zea_mays | 19 | 0 | 19 | 553 | 3.4 | Maize | Plants |
| Trichoplax_adhaerens | 14 | 0 | 14 | 162 | 8.6 | Placozoan (simple animal) | Metazoa |
| Trichophyton_verrucosum | 3 | 0 | 3 | 90 | 3.3 | Cow ringworm | Fungi |
| Trichophyton_tonsurans | 4 | 0 | 4 | 98 | 4.1 | Cause of Tinea capitis (scalp ringworm) | Fungi |
| Trichophyton_rubrum | 3 | 0 | 3 | 106 | 2.8 | Athletes foot, jock itch, ringworm | Fungi |
| Trichophyton_equinum | 3 | 0 | 3 | 100 | 3.0 | Horse ringworm | Fungi |
| Trichoderma_virens | 5 | 0 | 5 | 101 | 5.0 | Plant beneficial fungus | Fungi |
| Trichoderma_reesei | 5 | 0 | 5 | 98 | 5.1 | Hypocrea jecorina | Fungi |
| Trichoderma_atroviride | 4 | 0 | 4 | 101 | 4.0 | Cold tollerant, hyperparasite | Fungi |
| Tribolium_castaneum | 3 | 0 | 3 | 26 | 11.5 | Beetle | Metazoa |
| Tremella_mesenterica | 2 | 0 | 2 | 232 | 0.9 | Golden jelly fungus | Fungi |
| Toxoplasma_gondii | 3 | 0 | 3 | 393 | 0.8 | Toxoplasma gondii | Protists |
| Thielavia_terrestris | 5 | 0 | 5 | 110 | 4.5 | Thermophilic fungus related to Nerospora | Fungi |
| Theileria_parva | 0 | 0 | 0 | 82 | 0.0 | Cattle Parasite | Protists |
| Theileria_annulata | 0 | 0 | 0 | 86 | 0.0 | Cattle Parasite | Protists |
| Trypanosoma_congolense | 8 | 0 | 8 | 147 | 5.4 | Protist (animal parasite) | Protists |
| Trypanosoma_cruzi | 5 | 0 | 5 | 133 | 3.8 | Trypanosoma cruzi | Protists |
| Trypanosoma_vivax | 5 | 0 | 5 | 133 | 3.8 | Protist (animal parasite) | Protists |
| Yarrowia_lipolytica | 1 | 0 | 1 | 102 | 1.0 | Yeast | Fungi |
| Wuchereria_bancrofti | 11 | 0 | 11 | 225 | 4.9 | W. bancrofti (nematode) | Metazoa |
| Volvox_carteri | 1 | 0 | 1 | 178 | 0.6 | Volvox | Alga |
| Vitis_vinifera | 16 | 0 | 16 | 386 | 4.1 | Common Grape Vine | Plants |
| Vicugna_pacos | 75 | 0 | 75 | 228 | 32.9 | Alpaca | Metazoa |
| Verticillium_dahliae | 4 | 0 | 4 | 95 | 4.2 | Causes verticillium wilt | Fungi |
| Verticillium_albo_atrum | 2 | 0 | 2 | 87 | 2.3 | Plant pathogen targeting: hops, alfalfa, cotton | Fungi |
| Vanderwaltozyma_polyspora | 8 | 0 | 8 | 95 | 8.4 | Yeast: post-WGD lineage most divergent from cerevisiae | Fungi |
| Ustilago_maydis | 2 | 0 | 2 | 107 | 1.9 | Corn smut | Fungi |
| Uncinocarpus_reesii | 4 | 0 | 4 | 97 | 4.1 | Related to Coccidioides, the cause of Coccidiomycosis | Fungi |
| Tursiops_truncatus | 117 | 0 | 117 | 309 | 37.9 | Atlantic bottle-nosed dolphin | Metazoa |
| Tupaia_belangeri | 71 | 0 | 71 | 260 | 27.3 | Northern treeshrew | Metazoa |
| Tuber_melanosporum | 3 | 0 | 3 | 125 | 2.4 | Black truffle | Fungi |
| Zygosaccharomyces_rouxii | 8 | 0 | 8 | 83 | 9.6 | Z. rouxii | Fungi |
| Thecamonas_trahens | 1 | 0 | 1 | 129 | 0.8 | Gliding zooflagellate | Protists |
| Tetrahymena_thermophila | 0 | 0 | 0 | 213 | 0.0 | Ciliate | Protists |
| Tarsius_syrichta | 73 | 0 | 73 | 243 | 30.0 | Philippine tarsier | Metazoa |
| Schizophyllum_commune | 4 | 0 | 4 | 144 | 2.8 | Split Gill | Fungi |
| Schistosoma_japonicum | 7 | 0 | 7 | 211 | 3.3 | Blood fluke | Metazoa |
| Saprolegnia_parasitica | 1 | 0 | 1 | 174 | 0.6 | Water mold | Protists |
| Salpingoeca_rosetta | 3 | 0 | 3 | 143 | 2.1 | Choanoflagellate | Protists |
| Saccharomyces_paradoxus | 7 | 0 | 7 | 89 | 7.9 | S. paradoxus (yeast) | Fungi |
| Saccharomyces_mikatae | 7 | 0 | 7 | 92 | 7.6 | S. mikatae (yeast) | Fungi |
| Saccharomyces_kudriavzevii | 2 | 0 | 2 | 58 | 3.4 | S. kudriavzevii | Fungi |
| Saccharomyces_castellii | 8 | 0 | 8 | 75 | 10.7 | S. castellii | Fungi |
| Saccharomyces_bayanus | 7 | 0 | 7 | 91 | 7.7 | S. bayanus (yeast) | Fungi |
| Ricinus_communis | 17 | 0 | 17 | 353 | 4.8 | Castor oil plant | Plants |
| Rattus_norvegicus | 206 | 0 | 206 | 443 | 46.5 | Rat | Metazoa |
| Pyrenophora_tritici_repentis | 4 | 0 | 4 | 132 | 3.0 | Cause of tan spot | Fungi |
| Puccinia_triticina | 0 | 0 | 0 | 303 | 0.0 | Wheat leaf rust | Fungi |
| Puccinia_graminis | 0 | 0 | 0 | 262 | 0.0 | Stem rust | Fungi |
| Schizosaccharomyces_cryophilus | 1 | 0 | 1 | 112 | 0.9 | Fission yeast | Fungi |
| Schizosaccharomyces_japonicus | 1 | 0 | 1 | 116 | 0.9 | Fission yeast | Fungi |
| Schizosaccharomyces_octosporus | 2 | 0 | 2 | 110 | 1.8 | Fission yeast | Fungi |
| Takifugu_rubripes | 137 | 0 | 137 | 368 | 37.2 | Pufferfish | Metazoa |
| Taeniopygia_guttata | 96 | 0 | 96 | 294 | 32.7 | Zebra finch | Metazoa |
| Sus_scrofa | 108 | 0 | 108 | 289 | 37.4 | Pig | Metazoa |
| Strongylocentrotus_purpuratus | 50 | 0 | 50 | 553 | 9.0 | Sea urchin | Metazoa |
| Stagonospora_nodorum | 4 | 0 | 4 | 115 | 3.5 | Septoria nodorum, pathogen of wheat and related cereals, cause of glum | Fungi |
| Sporobolomyces_roseus | 1 | 0 | 1 | 90 | 1.1 | Red yeast, related to rusts and smuts | Fungi |
| Spizellomyces_punctatus | 4 | 0 | 4 | 164 | 2.4 | Fungus with weird mitochondrial genome | Fungi |
| Spermophilus_tridecemlineatus | 64 | 0 | 64 | 245 | 26.1 | Thirteen-lined ground squirrel | Metazoa |
| Sorghum_bicolor | 12 | 0 | 12 | 538 | 2.2 | Sorghum (drought-tolerant African grass) | Plants |
| Sorex_araneus | 69 | 0 | 69 | 239 | 28.9 | Eurasian common shrew | Metazoa |
| Serpula_lacrymans | 3 | 0 | 3 | 266 | 1.1 | Fungus (cause of dry rot) | Fungi |
| Selaginella_moellendorfii | 9 | 0 | 9 | 284 | 3.2 | Spikemoss | Plants |
| Sclerotinia_sclerotiorum | 3 | 0 | 3 | 152 | 2.0 | Pathogenic fungus, causes fuzzy growths on plants | Fungi |
| Schizosaccharomyces_pombe | 1 | 0 | 1 | 113 | 0.9 | Fission yeast | Fungi |
| Pteropus_vampyrus | 117 | 0 | 117 | 308 | 38.0 | Large flying fox | Metazoa |
| Mimulus_guttatus | 14 | 0 | 14 | 484 | 2.9 | Common monkey flower | Plants |
| Cyanidioschyzon_merolae | 0 | 0 | 0 | 52 | 0.0 | Red alga | Alga |
| Chlorella_NC64A | 3 | 0 | 3 | 166 | 1.8 | Microalgae | Alga |
| Chlamydomonas_reinhardtii | 2 | 0 | 2 | 145 | 1.4 | Chlamydomonas | Alga |
| Chaetomium_globosum | 5 | 0 | 5 | 124 | 4.0 | Mold allergen | Fungi |
| Cavia_porcellus | 133 | 0 | 133 | 350 | 38.0 | Guinea pig | Metazoa |
| Capsaspora_owczarzaki | 2 | 0 | 2 | 131 | 1.5 | Protist (snail symbiont) | Protists |
| Capitella_teleta | 46 | 0 | 46 | 348 | 13.2 | Segmented worm | Metazoa |
| Cannabis_sativa | 14 | 0 | 14 | 383 | 3.7 | Marijuana | Plants |
| Canis_familiaris | 202 | 0 | 202 | 431 | 46.9 | Dog | Metazoa |
| Candida_tropicalis | 1 | 0 | 1 | 90 | 1.1 | Yeast | Fungi |
| Candida_parapsilosis | 1 | 0 | 1 | 85 | 1.2 | Yeast | Fungi |
| Candida_lusitaniae | 1 | 0 | 1 | 82 | 1.2 | Yeast | Fungi |
| Candida_guilliermondii | 1 | 0 | 1 | 82 | 1.2 | Yeast | Fungi |
| Candida_glabrata | 9 | 0 | 9 | 87 | 10.3 | Human pathogen (fungus) | Fungi |
| Candida_dubliniensis | 1 | 0 | 1 | 92 | 1.1 | Fungal pathogen | Fungi |
| Candida_albicans | 1 | 0 | 1 | 93 | 1.1 | Yeast | Fungi |
| Chlorella_vulgaris | 3 | 0 | 3 | 139 | 2.2 | Green algae | Alga |
| Choloepus_hoffmanni | 58 | 0 | 58 | 232 | 25.0 | Hoffmanns two-fingered sloth | Metazoa |
| Ciona_intestinalis | 21 | 0 | 21 | 180 | 11.7 | Transparent sea squirt | Metazoa |
| Culex_quinquefasciatus | 35 | 0 | 35 | 261 | 13.4 | C. quinquefasciatus (mosquito) | Metazoa |
| Culex_pipiens | 34 | 0 | 34 | 322 | 10.6 | C. pipiens (mosquito) | Metazoa |
| Cucumis_sativus | 17 | 0 | 17 | 319 | 5.3 | Cucumber | Plants |
| Cryptosporidium_parvum | 1 | 0 | 1 | 77 | 1.3 | Cryptosporidium parvum | Protists |
| Cryptosporidium_muris | 0 | 0 | 0 | 85 | 0.0 | Protist (human parasite) | Protists |
| Cryptosporidium_hominis | 1 | 0 | 1 | 67 | 1.5 | Protist (human parasite) | Protists |
| Cryptococcus_neoformans | 0 | 0 | 0 | 107 | 0.0 | Cryptococcus neoformans | Fungi |
| Cryphonectria_parasitica | 5 | 0 | 5 | 99 | 5.1 | Chestnut blight fungus | Fungi |
| Coprinopsis_cinerea | 2 | 0 | 2 | 138 | 1.4 | Inky cap mushroom | Fungi |
| Colletotrichum_graminicola | 5 | 0 | 5 | 103 | 4.9 | Glomerella graminicola, causes plant cankers (anthracnose) on maize an | Fungi |
| Cochliobolus_heterostrophus_C5 | 4 | 0 | 4 | 114 | 3.5 | Southern Corn Leaf Blight | Fungi |
| Coccomyxa_C_169 | 2 | 0 | 2 | 144 | 1.4 | Green algae | Alga |
| Coccidioides_posadasii | 3 | 0 | 3 | 113 | 2.7 | Cause of Valley Fever | Fungi |
| Coccidioides_immitis | 4 | 0 | 4 | 104 | 3.8 | Cause of Valley Fever | Fungi |
| Ciona_savignyi | 20 | 0 | 20 | 158 | 12.7 | Pacific transparent sea squirt | Metazoa |
| Callithrix_jacchus | 221 | 0 | 221 | 470 | 47.0 | Common marmoset | Metazoa |
| Caenorhabditis_remanei | 23 | 0 | 23 | 357 | 6.4 | C. remanei (nematode) | Metazoa |
| Aspergillus_flavus | 3 | 0 | 3 | 97 | 3.1 | Aspergillus | Fungi |
| Aspergillus_clavatus | 4 | 0 | 4 | 109 | 3.7 | Aspergillus | Fungi |
| Aspergillus_carbonarius | 4 | 0 | 4 | 100 | 4.0 | Black spore mold | Fungi |
| Ashbya_gossypii | 5 | 0 | 5 | 84 | 6.0 | Plant pathogen (fungus) | Fungi |
| Arthroderma_benhamiae | 3 | 0 | 3 | 95 | 3.2 | Ringworm | Fungi |
| Arabidopsis_lyrata | 14 | 0 | 14 | 519 | 2.7 | Mustard | Plants |
| Apis_mellifera | 45 | 0 | 45 | 203 | 22.2 | Honey bee | Metazoa |
| Anopheles_gambiae | 36 | 0 | 36 | 209 | 17.2 | Mosquito (seven types) | Metazoa |
| Anolis_carolinensis | 111 | 0 | 111 | 334 | 33.2 | Green anole | Metazoa |
| Amphimedon_queenslandica | 14 | 0 | 14 | 329 | 4.3 | Sponge | Metazoa |
| Alternaria_brassicicola | 4 | 0 | 4 | 105 | 3.8 | Plant pathogen (brassica dark leaf spot) | Fungi |
| Allomyces_macrogynus | 4 | 0 | 4 | 249 | 1.6 | Zoosporic fungus | Fungi |
| Ailuropoda_melanoleuca | 126 | 0 | 126 | 347 | 36.3 | Panda | Metazoa |
| Agaricus_bisporus | 3 | 0 | 3 | 188 | 1.6 | Common (button) mushroom | Fungi |
| Aedes_aegypti | 42 | 0 | 42 | 248 | 16.9 | Yellowfever mosquito | Metazoa |
| Aspergillus_fumigatus | 4 | 0 | 4 | 99 | 4.0 | Cause of aspergillosis | Fungi |
| Aspergillus_niger | 2 | 0 | 2 | 105 | 1.9 | Aspergillus (black mold) | Fungi |
| Aspergillus_oryzae | 2 | 0 | 2 | 107 | 1.9 | Koji mold (makes sake) | Fungi |
| Caenorhabditis_japonica | 19 | 0 | 19 | 357 | 5.3 | C. japonica (nematode) | Metazoa |
| Caenorhabditis_briggsae | 24 | 0 | 24 | 258 | 9.3 | C. briggsae | Metazoa |
| Caenorhabditis_brenneri | 30 | 0 | 30 | 232 | 12.9 | C. brenneri (nematode) | Metazoa |
| Brugia_malayi | 11 | 0 | 11 | 182 | 6.0 | B. malayi (nematode) | Metazoa |
| Branchiostoma_floridae | 58 | 0 | 58 | 413 | 14.0 | Florida lancelet (fish) | Metazoa |
| Brachypodium_distachyon | 13 | 0 | 13 | 440 | 3.0 | Purple false brome (grass) | Plants |
| Botrytis_cinerea | 3 | 0 | 3 | 125 | 2.4 | Botrytis cinerea | Fungi |
| Bos_taurus | 142 | 0 | 142 | 371 | 38.3 | Bovine | Metazoa |
| Bombyx_mori | 26 | 0 | 26 | 203 | 12.8 | Silk moth | Metazoa |
| Blastomyces_dermatitidis | 5 | 0 | 5 | 112 | 4.5 | Causes blastomycosis | Fungi |
| Bigelowiella_natans | 0 | 0 | 0 | 6 | 0.0 | Chlorarachniophyte algal symbiont | Alga |
| Batrachochytrium_dendrobatidis | 2 | 0 | 2 | 122 | 1.6 | Chytrid targetting amphibians | Fungi |
| Babesia_bovis | 0 | 0 | 0 | 88 | 0.0 | Cattle Parasite | Protists |
| Aureococcus_anophagefferens | 3 | 0 | 3 | 135 | 2.2 | Brown tide blooms | Alga |
| Aspergillus_terreus | 3 | 0 | 3 | 101 | 3.0 | Aspergillus terreus | Fungi |
| Acyrtosiphon_pisum | 33 | 0 | 33 | 379 | 8.7 | Pea aphid | Metazoa |
| Microsporum_gypseum | 3 | 0 | 3 | 105 | 2.9 | Mold, may cause ringworm | Fungi |
| Leishmania_mexicana | 7 | 0 | 7 | 145 | 4.8 | Protist (human parasite) | Protists |
| Leishmania_infantum | 6 | 0 | 6 | 148 | 4.1 | Protist (human parasite) | Protists |
| Leishmania_braziliensis | 7 | 0 | 7 | 146 | 4.8 | Protist (human parasite) | Protists |
| Lachancea_kluyveri | 7 | 0 | 7 | 89 | 7.9 | L. kluyveri (budding yeast) | Fungi |
| Laccaria_bicolor | 3 | 0 | 3 | 147 | 2.0 | Deceiver (small tan colored mushroom) | Fungi |
| Kluyveromyces_waltii | 5 | 0 | 5 | 92 | 5.4 | K. waltii (yeast) | Fungi |
| Kluyveromyces_thermotolerans | 6 | 0 | 6 | 89 | 6.7 | K. thermotolerans | Fungi |
| Kluyveromyces_lactis | 6 | 0 | 6 | 77 | 7.8 | Yeast | Fungi |
| Ixodes_scapularis | 21 | 0 | 21 | 202 | 10.4 | Deer tick | Metazoa |
| Hydra_magnipapillata | 12 | 0 | 12 | 277 | 4.3 | Fresh water polp | Metazoa |
| Histoplasma_capsulatum | 4 | 0 | 4 | 106 | 3.8 | Histoplasma capsulatum | Fungi |
| Heterobasidion_annosum | 1 | 0 | 1 | 169 | 0.6 | Annosum root rot | Fungi |
| Hemiselmis_andersenii | 0 | 0 | 0 | 7 | 0.0 | Nucleomorph (remnant of an algal sybiont) | Alga |
| Helobdella_robusta | 27 | 0 | 27 | 401 | 6.7 | Leech | Metazoa |
| Guillardia_theta | 0 | 0 | 0 | 7 | 0.0 | Cryptomonad | Protists |
| Loa_loa | 13 | 0 | 13 | 198 | 6.6 | L. loa (nematode) | Metazoa |
| Lodderomyces_elongisporus | 1 | 0 | 1 | 92 | 1.1 | Yeast | Fungi |
| Lottia_gigantea | 28 | 0 | 28 | 300 | 9.3 | Owl limpet (sea snail) | Metazoa |
| Microsporum_canis | 3 | 0 | 3 | 102 | 2.9 | Cause of Tinea capitis (scalp ringworm) | Fungi |
| Micromonas_pusilla | 2 | 0 | 2 | 182 | 1.1 | Flagellar marine algae | Alga |
| Microcebus_murinus | 82 | 0 | 82 | 262 | 31.3 | Lesser mouse lemur | Metazoa |
| Meloidogyne_incognita | 15 | 0 | 15 | 316 | 4.7 | Southern root-knot nematode | Metazoa |
| Meleagris_gallopavo | 80 | 0 | 80 | 274 | 29.2 | Turkey | Metazoa |
| Melampsora_laricis_populina | 2 | 0 | 2 | 152 | 1.3 | Leaf rust fungus | Fungi |
| Medicago_truncatula | 15 | 0 | 15 | 398 | 3.8 | Barrel Clover (legume) | Plants |
| Manihot_esculenta | 42 | 0 | 42 | 874 | 4.8 | Cassava (woody shrub) | Plants |
| Malus_x_domestica | 25 | 0 | 25 | 938 | 2.7 | Domesticated apple | Plants |
| Malassezia_globosa | 1 | 0 | 1 | 85 | 1.2 | Yeast (human symbiont) | Fungi |
| Magnaporthe_oryzae | 5 | 0 | 5 | 100 | 5.0 | Magnaporthe grisea, rice blast fungus, many others | Fungi |
| Macropus_eugenii | 78 | 0 | 78 | 266 | 29.3 | Tammar wallaby | Metazoa |
| Macaca_mulatta | 157 | 0 | 157 | 387 | 40.6 | Rhesus macaque | Metazoa |
| Loxodonta_africana | 131 | 0 | 131 | 344 | 38.1 | African elephant | Metazoa |
| Lotus_japonicus | 10 | 0 | 10 | 552 | 1.8 | Wild legume | Plants |
| Gorilla_gorilla | 153 | 0 | 153 | 371 | 41.2 | Gorilla | Metazoa |
| Glycine_max | 41 | 0 | 41 | 818 | 5.0 | Soybean | Plants |
| Drosophila_willistoni | 49 | 0 | 49 | 213 | 23.0 | D. willistoni (fruit fly) | Metazoa |
| Drosophila_virilis | 47 | 0 | 47 | 196 | 24.0 | D. virilis (fruit fly) | Metazoa |
| Drosophila_simulans | 42 | 0 | 42 | 190 | 22.1 | D. simulans (fruit fly) | Metazoa |
| Drosophila_sechellia | 50 | 0 | 50 | 207 | 24.2 | D. sechellia (fruit fly) | Metazoa |
| Drosophila_pseudoobscura | 46 | 0 | 46 | 209 | 22.0 | Fruit fly | Metazoa |
| Drosophila_persimilis | 40 | 0 | 40 | 179 | 22.3 | D. persimilis (fruit fly) | Metazoa |
| Drosophila_mojavensis | 51 | 0 | 51 | 195 | 26.2 | D. mojavensis (fruit fly) | Metazoa |
| Drosophila_grimshawi | 46 | 0 | 46 | 198 | 23.2 | D. grimshawi (fruit fly) | Metazoa |
| Drosophila_erecta | 48 | 0 | 48 | 201 | 23.9 | D. erecta (fruit fly) | Metazoa |
| Drosophila_ananassae | 50 | 0 | 50 | 196 | 25.5 | D. ananassae (fruit fly) | Metazoa |
| Dipodomys_ordii | 85 | 0 | 85 | 270 | 31.5 | Ords kangaroo rat | Metazoa |
| Dictyostelium_purpureum | 2 | 0 | 2 | 135 | 1.5 | Slime mold | Protists |
| Dictyostelium_discoideum | 2 | 0 | 2 | 138 | 1.4 | Slime mold | Protists |
| Debaryomyces_hansenii | 1 | 0 | 1 | 96 | 1.0 | Salt loving yeast | Fungi |
| Dasypus_novemcinctus | 67 | 0 | 67 | 240 | 27.9 | Nine-banded armadillo | Metazoa |
| Drosophila_yakuba | 52 | 0 | 52 | 203 | 25.6 | D. yakuba (fruit fly) | Metazoa |
| Echinops_telfairi | 83 | 0 | 83 | 300 | 27.7 | Lesser hedgehog tenrec | Metazoa |
| Emiliania_huxleyi | 2 | 0 | 2 | 391 | 0.5 | EHUX | Alga |
| Giardia_lamblia | 0 | 0 | 0 | 36 | 0.0 | Giardia lamblia | Protists |
| Gasterosteus_aculeatus | 141 | 0 | 141 | 394 | 35.8 | Three-spined stickleback | Metazoa |
| Fusarium_verticillioides | 4 | 0 | 4 | 101 | 4.0 | Gibberella fujikuroi, cause of bakanae disease in rice | Fungi |
| Fusarium_oxysporum | 4 | 0 | 4 | 104 | 3.8 | Need subspecies, but soil microbe digesting lignin | Fungi |
| Fusarium_graminearum | 3 | 0 | 3 | 111 | 2.7 | Gibberella zeae, cause of wheat headblight | Fungi |
| Fragilariopsis_cylindrus | 1 | 0 | 1 | 157 | 0.6 | Planktonic diatom, grows on ice | Alga |
| Felis_catus | 50 | 0 | 50 | 228 | 21.9 | Cat | Metazoa |
| Erinaceus_europaeus | 68 | 0 | 68 | 240 | 28.3 | Western European hedgehog | Metazoa |
| Equus_caballus | 124 | 0 | 124 | 320 | 38.8 | Horse | Metazoa |
| Enterocytozoon_bieneusi | 0 | 0 | 0 | 58 | 0.0 | Microsporidia | Fungi |
| Entamoeba_invadens | 0 | 0 | 0 | 148 | 0.0 | Entamoeba (animal parasite) | Protists |
| Entamoeba_histolytica | 0 | 0 | 0 | 116 | 0.0 | Entamoeba (animal parasite) | Protists |
| Entamoeba_dispar | 0 | 0 | 0 | 120 | 0.0 | Entamoeba (animal parasite) | Protists |
| Encephalitozoon_intestinalis | 0 | 0 | 0 | 41 | 0.0 | Protist (human parasite); smallest known genome | Fungi |
| Encephalitozoon_cuniculi | 0 | 0 | 0 | 41 | 0.0 | Encephalitozoon cuniculi | Fungi |
| Daphnia_pulex | 32 | 0 | 32 | 468 | 6.8 | Water flea | Metazoa |