CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Family Name
Num Motifs
Total Direct
Total Inferred
Total RBPs
Pct RBPs
PFam ID
RRM
5497
182
5315
31819
17.3
RRM_1
CCHC ZF
0
0
0
8668
0.0
zf-CCHC
CCCH ZF
280
7
273
5561
5.0
zf-CCCH
KH
1026
29
997
4687
21.9
KH_1
RanBP ZF
49
1
48
2024
2.4
zf-RanBP
S1
257
1
256
1950
13.2
S1
PUF
124
11
113
1551
8.0
PUF
zf-CCCH,RRM_1
0
0
0
904
0.0
zf-CCCH,RRM_1
CSD
224
3
221
776
28.9
CSD
YTH
48
1
47
727
6.6
YTH
La
0
0
0
666
0.0
La
zf-CCHC,RRM_1
189
3
186
641
29.5
zf-CCHC,RRM_1
La+RRM
0
0
0
515
0.0
La,RRM_1
zf-RanBP,RRM_1
109
2
107
515
21.2
zf-RanBP,RRM_1
CCHH ZF
2
2
0
195
1.0
zf-CCHH
KH_1,RRM_1
73
3
70
177
41.2
KH_1,RRM_1
zf-CCHC,CSD
76
1
75
177
42.9
zf-CCHC,CSD
zf-CCHC,KH_1
0
0
0
170
0.0
zf-CCHC,KH_1
zf-CCCH,zf-CCHC
0
0
0
123
0.0
zf-CCCH,zf-CCHC
PUF,RRM_1
0
0
0
116
0.0
PUF,RRM_1
KH_1,S1
0
0
0
115
0.0
KH_1,S1
KH_1,SAM_1
0
0
0
104
0.0
KH_1,SAM_1
SAM
97
2
95
97
100.0
SAM_1
zf-CCCH,KH_1
0
0
0
78
0.0
zf-CCCH,KH_1
RRM_1,YTH
0
0
0
44
0.0
RRM_1,YTH
zf-CCHC,SAM_1
0
0
0
38
0.0
zf-CCHC,SAM_1
CSD,RRM_1
0
0
0
21
0.0
CSD,RRM_1
zf-CCCH,YTH
0
0
0
18
0.0
zf-CCCH,YTH
CSD,S1
0
0
0
17
0.0
CSD,S1
zf-CCHC,S1
0
0
0
16
0.0
zf-CCHC,S1
zf-CCCH,PUF
0
0
0
16
0.0
zf-CCCH,PUF
zf-C2H2,zf-CCCH
0
0
0
8
0.0
zf-C2H2,zf-CCCH
zf-CCHC,KH_1,RRM_1
0
0
0
5
0.0
zf-CCHC,KH_1,RRM_1
zf-CCHC,CSD,S1
0
0
0
5
0.0
zf-CCHC,CSD,S1
zf-CCCH,CSD
0
0
0
5
0.0
zf-CCCH,CSD
C2H2 ZF
4
1
3
4
100.0
zf-C2H2
zf-CCHC,zf-RanBP
0
0
0
3
0.0
zf-CCHC,zf-RanBP
CSD,KH_1,S1
0
0
0
3
0.0
CSD,KH_1,S1
zf-C2H2,RRM_1
0
0
0
3
0.0
zf-C2H2,RRM_1
zf-C2H2,zf-CCHC
0
0
0
3
0.0
zf-C2H2,zf-CCHC
zf-CCCH,zf-CCHC,RRM_1
0
0
0
3
0.0
zf-CCCH,zf-CCHC,RRM_1
zf-CCCH,zf-RanBP
0
0
0
3
0.0
zf-CCCH,zf-RanBP
zf-CCCH,zf-RanBP,RRM_1
0
0
0
2
0.0
zf-CCCH,zf-RanBP,RRM_1
CSD,SAM_1
0
0
0
2
0.0
CSD,SAM_1
KH_1,zf-RanBP
0
0
0
2
0.0
KH_1,zf-RanBP
La,SAM_1
0
0
0
1
0.0
La,SAM_1
RRM_1,SAM_1
0
0
0
1
0.0
RRM_1,SAM_1
zf-C2H2,KH_1
0
0
0
1
0.0
zf-C2H2,KH_1
Unknown
1
1
0
1
100.0
UNKNOWN
zf-C2H2,zf-RanBP,RRM_1
0
0
0
1
0.0
zf-C2H2,zf-RanBP,RRM_1
zf-CCCH,zf-CCHC,zf-RanBP
0
0
0
1
0.0
zf-CCCH,zf-CCHC,zf-RanBP
zf-CCHC,CSD,RRM_1
0
0
0
1
0.0
zf-CCHC,CSD,RRM_1
zf-CCHC,KH_1,zf-RanBP
0
0
0
1
0.0
zf-CCHC,KH_1,zf-RanBP
zf-RanBP,SAM_1
0
0
0
1
0.0
zf-RanBP,SAM_1
KH_1,zf-RanBP,RRM_1
0
0
0
1
0.0
KH_1,zf-RanBP,RRM_1