NONO (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSEEUG00000014404 T079794_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
NONO
M10520_2.00		 Erinaceus europaeus NGURGUKK JPLE
Sasse et al.(2025)
RM_Eri.eur_ENSEEUG00000014404 		0.055

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
1.000
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
1.000
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.730
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.730
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.730
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.055
(90.91%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000013151 RRM 68 144
ENSEEUP00000013151 RRM 142 210

RNA contacting residues

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29930.m000611 Ricinus communis 29930.m000611 N 0.000
AMTR_s00010p00058910 Amborella trichopoda AMTR_s00010p00058910 N 0.000
Aquca_004_00090 Aquilegia coerulea Aquca_004_00090 N 0.000
Aquca_017_00550 Aquilegia coerulea Aquca_017_00550 N 0.000
AT3G20930 Arabidopsis thaliana AT3G20930 N 0.000
BGIOSGA008982 Oryza indica BGIOSGA008982 N 0.000
Bo5g105100 Brassica oleracea Bo5g105100 N 0.000
Bra031244 Brassica rapa Bra031244 N 0.000
BRADI3G57027 Brachypodium distachyon BRADI3G57027 N 0.000
Ca_08429 Cicer arietinum Ca_08429 N 0.000
Cagra.10399s0003 Capsella grandiflora Cagra.10399s0003 N 0.000
Carubv10015346m.g Capsella rubella Carubv10015346m.g N 0.000
cassava43180.valid.m1 Manihot esculenta cassava43180.valid.m1 N 0.000
chr5.CM0095.50.nc Lotus japonicus chr5.CM0095.50.nc N 0.000
Ciclev10031772m.g Citrus clementina Ciclev10031772m.g N 0.000
Cla013913 Citrullus lanatus Cla013913 N 0.000
Cucsa.364730 Cucumis sativus Cucsa.364730 N 0.000
evm.TU.contig_32761 Carica papaya evm.TU.contig_32761 N 0.000
F775_23307 Aegilops tauschii F775_23307 N 0.000
fgenesh2_kg.3__2322__AT3G20930.1 Arabidopsis lyrata fgenesh2_kg.3__2322__AT3G20930.1 N 0.000
GLYMA10G34835 Glycine max GLYMA10G34835 N 0.000
GLYMA20G32820 Glycine max GLYMA20G32820 N 0.000
Gorai.011G229900 Gossypium raimondii Gorai.011G229900 N 0.000
GRMZM5G899787 Zea mays GRMZM5G899787 N 0.000
GSMUA_Achr2G01230_001 Musa acuminata GSMUA_Achr2G01230_001 N 0.000
LPERR02G25550 Leersia perrieri LPERR02G25550 N 0.000
Lus10025573.g Linum usitatissimum Lus10025573.g N 0.000
Lus10027035.g Linum usitatissimum Lus10027035.g N 0.000
MDP0000130532 Malus domestica MDP0000130532 N 0.000
MDP0000136590 Malus domestica MDP0000136590 N 0.000
mg026650m Mimulus guttatus mg026650m N 0.000
MTR_1g092860 Medicago truncatula MTR_1g092860 N 0.000
OB02G38290 Oryza brachyantha OB02G38290 N 0.000
OBART02G31260 Oryza barthii OBART02G31260 N 0.000
OGLUM02G31960 Oryza glumaepatula OGLUM02G31960 N 0.000
OLONG_004858 Oryza longistaminata OLONG_004858 N 0.000
ONIVA02G34450 Oryza nivara ONIVA02G34450 N 0.000
ONIVA02G34760 Oryza nivara ONIVA02G34760 N 0.000
OPUNC02G28980 Oryza punctata OPUNC02G28980 N 0.000
orange1.1g024012m.g Citrus sinensis orange1.1g024012m.g N 0.000
ORGLA02G0267600 Oryza glaberrima ORGLA02G0267600 N 0.000
ORUFI02G32950 Oryza rufipogon ORUFI02G32950 N 0.000
OS02G0730800 Oryza sativa OS02G0730800 N 0.000
Pavir.Aa00450 Panicum virgatum Pavir.Aa00450 N 0.000
Pavir.Ab02925 Panicum virgatum Pavir.Ab02925 N 0.000
PDK_20s1387871g001 Phoenix dactylifera PDK_20s1387871g001 N 0.000
PGSC0003DMG400019468 Solanum tuberosum PGSC0003DMG400019468 N 0.000
PK25017.1 Cannabis sativa PK25017.1 N 0.000
POPTR_0008s02290 Populus trichocarpa POPTR_0008s02290 N 0.000
POPTR_0010s24380 Populus trichocarpa POPTR_0010s24380 N 0.000
POPTR_0475s00200 Populus trichocarpa POPTR_0475s00200 N 0.000
PRUPE_ppa006586mg Prunus persica PRUPE_ppa006586mg N 0.000
SapurV1A.0036s0040 Salix purpurea SapurV1A.0036s0040 N 0.000
Sb04g028980 Sorghum bicolor Sb04g028980 N 0.000
Si017445m.g Setaria italica Si017445m.g N 0.000
Solyc11g007160.1 Solanum lycopersicum Solyc11g007160.1 N 0.000
TCM_043962 Theobroma cacao TCM_043962 N 0.000
Thhalv10020913m.g Eutrema salsugineum Thhalv10020913m.g N 0.000
Traes_6AL_BB536BB82 Triticum aestivum Traes_6AL_BB536BB82 N 0.000
Traes_6BL_2CBC14F91 Triticum aestivum Traes_6BL_2CBC14F91 N 0.000
Traes_6DL_70039DA8C Triticum aestivum Traes_6DL_70039DA8C N 0.000
TRIUR3_33478 Triticum urartu TRIUR3_33478 N 0.000
VIT_13s0106g00500 Vitis vinifera VIT_13s0106g00500 N 0.000