SFPQ (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSVPAG00000006960 T088997_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
SFPQ
M28609_2.00		 Vicugna pacos NGURGKKU JPLE
Sasse et al.(2025)
RM_Vic.pac_ENSVPAG00000006960 		0.008

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
1.000
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
1.000
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
1.000
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
1.000
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.730
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.008
(88.41%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000006470 RRM 294 371
ENSVPAP00000006470 RRM 368 436

RNA contacting residues

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G179715 Zea mays GRMZM2G179715 N 0.000
Pavir.Ea04176 Panicum virgatum Pavir.Ea04176 N 0.000
Pavir.Eb04064 Panicum virgatum Pavir.Eb04064 N 0.000
Sb03g047450 Sorghum bicolor Sb03g047450 N 0.000