ENSONIG00000017737 (Oreochromis niloticus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSONIG00000017737 T084932_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSONIG00000017737
M18855_2.00		 Oreochromis niloticus NGURGUKK JPLE
Sasse et al.(2025)
RM_Ore.nil_ENSONIG00000017737 		0.030

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.804
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.804
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.804
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.804
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.030
(91.02%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000022362 RRM 272 349
ENSONIP00000022362 RRM 346 425
ENSONIP00000022363 RRM 273 350
ENSONIP00000022363 RRM 347 426

RNA contacting residues

Links

Other RRM family RBPs
Other Oreochromis niloticus RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SCLCIDRAFT_28327 Scleroderma citrinum SCLCIDRAFT_28327 N 0.000
SCLCIDRAFT_31634 Scleroderma citrinum SCLCIDRAFT_31634 N 0.000
SCLCIDRAFT_31519 Scleroderma citrinum SCLCIDRAFT_31519 N 0.000
SCLCIDRAFT_30959 Scleroderma citrinum SCLCIDRAFT_30959 N 0.000
SCLCIDRAFT_28990 Scleroderma citrinum SCLCIDRAFT_28990 N 0.000
SCLCIDRAFT_28974 Scleroderma citrinum SCLCIDRAFT_28974 N 0.000
SCLCIDRAFT_28923 Scleroderma citrinum SCLCIDRAFT_28923 N 0.000
SCLCIDRAFT_28683 Scleroderma citrinum SCLCIDRAFT_28683 N 0.000
SCLCIDRAFT_28423 Scleroderma citrinum SCLCIDRAFT_28423 N 0.000
SCLCIDRAFT_32032 Scleroderma citrinum SCLCIDRAFT_32032 N 0.000
SCLCIDRAFT_28321 Scleroderma citrinum SCLCIDRAFT_28321 N 0.000
SCLCIDRAFT_27997 Scleroderma citrinum SCLCIDRAFT_27997 N 0.000
SCLCIDRAFT_27924 Scleroderma citrinum SCLCIDRAFT_27924 N 0.000
SCLCIDRAFT_27836 Scleroderma citrinum SCLCIDRAFT_27836 N 0.000
SCLCIDRAFT_27297 Scleroderma citrinum SCLCIDRAFT_27297 N 0.000
SCLCIDRAFT_27191 Scleroderma citrinum SCLCIDRAFT_27191 N 0.000
SCLCIDRAFT_26624 Scleroderma citrinum SCLCIDRAFT_26624 N 0.000
SCLCIDRAFT_26139 Scleroderma citrinum SCLCIDRAFT_26139 N 0.000
SCLCIDRAFT_33461 Scleroderma citrinum SCLCIDRAFT_33461 N 0.000
SCLCIDRAFT_98992 Scleroderma citrinum SCLCIDRAFT_98992 N 0.000
SCLCIDRAFT_98863 Scleroderma citrinum SCLCIDRAFT_98863 N 0.000
SCLCIDRAFT_80970 Scleroderma citrinum SCLCIDRAFT_80970 N 0.000
SCLCIDRAFT_76065 Scleroderma citrinum SCLCIDRAFT_76065 N 0.000
SCLCIDRAFT_34725 Scleroderma citrinum SCLCIDRAFT_34725 N 0.000
SCLCIDRAFT_34162 Scleroderma citrinum SCLCIDRAFT_34162 N 0.000
SCLCIDRAFT_34055 Scleroderma citrinum SCLCIDRAFT_34055 N 0.000
SCLCIDRAFT_33643 Scleroderma citrinum SCLCIDRAFT_33643 N 0.000
SCLCIDRAFT_25980 Scleroderma citrinum SCLCIDRAFT_25980 N 0.000
SCLCIDRAFT_33450 Scleroderma citrinum SCLCIDRAFT_33450 N 0.000
SCLCIDRAFT_33416 Scleroderma citrinum SCLCIDRAFT_33416 N 0.000
SCLCIDRAFT_33383 Scleroderma citrinum SCLCIDRAFT_33383 N 0.000
SCLCIDRAFT_33314 Scleroderma citrinum SCLCIDRAFT_33314 N 0.000
SCLCIDRAFT_33289 Scleroderma citrinum SCLCIDRAFT_33289 N 0.000
SCLCIDRAFT_33092 Scleroderma citrinum SCLCIDRAFT_33092 N 0.000
SCLCIDRAFT_32712 Scleroderma citrinum SCLCIDRAFT_32712 N 0.000
SCLCIDRAFT_32260 Scleroderma citrinum SCLCIDRAFT_32260 N 0.000
SCLCIDRAFT_130197 Scleroderma citrinum SCLCIDRAFT_130197 N 0.000
SCLCIDRAFT_18898 Scleroderma citrinum SCLCIDRAFT_18898 N 0.000
SCLCIDRAFT_142191 Scleroderma citrinum SCLCIDRAFT_142191 N 0.000
SCLCIDRAFT_138087 Scleroderma citrinum SCLCIDRAFT_138087 N 0.000
SCLCIDRAFT_138073 Scleroderma citrinum SCLCIDRAFT_138073 N 0.000
SCLCIDRAFT_136301 Scleroderma citrinum SCLCIDRAFT_136301 N 0.000
SCLCIDRAFT_132226 Scleroderma citrinum SCLCIDRAFT_132226 N 0.000
SCLCIDRAFT_130837 Scleroderma citrinum SCLCIDRAFT_130837 N 0.000
SCLCIDRAFT_130276 Scleroderma citrinum SCLCIDRAFT_130276 N 0.000
SCLCIDRAFT_18907 Scleroderma citrinum SCLCIDRAFT_18907 N 0.000
SCLCIDRAFT_129539 Scleroderma citrinum SCLCIDRAFT_129539 N 0.000
SCLCIDRAFT_122881 Scleroderma citrinum SCLCIDRAFT_122881 N 0.000
SCLCIDRAFT_118207 Scleroderma citrinum SCLCIDRAFT_118207 N 0.000
SCLCIDRAFT_117765 Scleroderma citrinum SCLCIDRAFT_117765 N 0.000
SCLCIDRAFT_116799 Scleroderma citrinum SCLCIDRAFT_116799 N 0.000
SCLCIDRAFT_1155453 Scleroderma citrinum SCLCIDRAFT_1155453 N 0.000
SCLCIDRAFT_113626 Scleroderma citrinum SCLCIDRAFT_113626 N 0.000
SCLCIDRAFT_112516 Scleroderma citrinum SCLCIDRAFT_112516 N 0.000
SCLCIDRAFT_23013 Scleroderma citrinum SCLCIDRAFT_23013 N 0.000
SCLCIDRAFT_25977 Scleroderma citrinum SCLCIDRAFT_25977 N 0.000
SCLCIDRAFT_25100 Scleroderma citrinum SCLCIDRAFT_25100 N 0.000
SCLCIDRAFT_24456 Scleroderma citrinum SCLCIDRAFT_24456 N 0.000
SCLCIDRAFT_24424 Scleroderma citrinum SCLCIDRAFT_24424 N 0.000
SCLCIDRAFT_23914 Scleroderma citrinum SCLCIDRAFT_23914 N 0.000
SCLCIDRAFT_23718 Scleroderma citrinum SCLCIDRAFT_23718 N 0.000
SCLCIDRAFT_23591 Scleroderma citrinum SCLCIDRAFT_23591 N 0.000
SCLCIDRAFT_23076 Scleroderma citrinum SCLCIDRAFT_23076 N 0.000
SCLCIDRAFT_101943 Scleroderma citrinum SCLCIDRAFT_101943 N 0.000
SCLCIDRAFT_22493 Scleroderma citrinum SCLCIDRAFT_22493 N 0.000
SCLCIDRAFT_21795 Scleroderma citrinum SCLCIDRAFT_21795 N 0.000
SCLCIDRAFT_21284 Scleroderma citrinum SCLCIDRAFT_21284 N 0.000
SCLCIDRAFT_21262 Scleroderma citrinum SCLCIDRAFT_21262 N 0.000
SCLCIDRAFT_21046 Scleroderma citrinum SCLCIDRAFT_21046 N 0.000
SCLCIDRAFT_20624 Scleroderma citrinum SCLCIDRAFT_20624 N 0.000
SCLCIDRAFT_19840 Scleroderma citrinum SCLCIDRAFT_19840 N 0.000