ENSONIG00000017737 (Oreochromis niloticus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSONIG00000017737 T084932_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSONIG00000017737
M18855_2.00		 Oreochromis niloticus NGURGUKK JPLE
Sasse et al.(2025)
RM_Ore.nil_ENSONIG00000017737 		0.030

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.804
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.804
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.804
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.804
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.030
(91.02%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000022362 RRM 272 349
ENSONIP00000022362 RRM 346 425
ENSONIP00000022363 RRM 273 350
ENSONIP00000022363 RRM 347 426

RNA contacting residues

Links

Other RRM family RBPs
Other Oreochromis niloticus RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.886
sfpq Oryzias latipes ENSORLG00000007459 I 0.861
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.861
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.854
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.854
sfpq Danio rerio ENSDARG00000011564 I 0.850
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.848
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.835
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.823
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.816
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.810
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.804
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.804
SFPQ Procavia capensis ENSPCAG00000006164 I 0.804
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.804
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.804
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.804
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.804
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.804
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.804
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.804
Aan_R015520 Calypte anna Aan_R015520 I 0.804
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.804
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.804
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.804
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.804
Tal_R009770 Tyto alba Tal_R009770 I 0.804
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.804
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.804
SFPQ Bos taurus ENSBTAG00000016328 I 0.804
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.804
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.804
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.804
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.804
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.804
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.804
SFPQ Echinops telfairi ENSETEG00000001095 I 0.804
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.804
SFPQ Homo sapiens ENSG00000116560 D 0.804
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.804
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.804
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.804
Sfpq Mus musculus ENSMUSG00000028820 I 0.804
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.804
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.804
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.804
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.804
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.797
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.797
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.797
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.797
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.797
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.791
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.791
SFPQ Gallus gallus ENSGALG00000002514 I 0.791
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.791
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.785
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.785
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.778
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.778
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.778
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.766
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.759
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.759
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.741
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.734
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.728
Aan_R001274 Calypte anna Aan_R001274 I 0.728
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.728
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.728
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.728
Tal_R009732 Tyto alba Tal_R009732 I 0.728
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.728
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.728
PSPC1 Gallus gallus ENSGALG00000017142 I 0.728
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.722
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.715
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.715
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.715
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.715
PSPC1 Bos taurus ENSBTAG00000003934 I 0.715
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.715
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.715
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.715
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.709
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.709
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.709
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.709
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.709
PSPC1 Sorex araneus ENSSARG00000000888 I 0.709
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.709
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.709
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.709
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.709
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.709
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.709
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.709
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.709
PSPC1 Felis catus ENSFCAG00000027841 I 0.709
PSPC1 Homo sapiens ENSG00000121390 I 0.709
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.709
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.709
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.709
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.709
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.709
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.709
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.709
Pspc1 Mus musculus ENSMUSG00000021938 I 0.709
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.709
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.709
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.709
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.703
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.703