CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

NONO *(Otolemur garnettii)* RRM
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00076 (RRMs_3D)	IPR000504	ENSOGAG00000004834	T084553_2.00	Ensembl (2018-Dec-8)
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	JPLE e-dist
NONO M20350_2.00	Otolemur garnettii		NGURGUKK	JPLE Sasse et al.(2025) RM_Oto.gar_ENSOGAG00000004834	0.055
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
NONO M00507_2.00	Homo sapiens	Sequence logo not available	GAGAGGAAC	SELEX Cook et al.(2011)	1.000
NONO M00505_2.00	Homo sapiens		AGGGA	SELEX Cook et al.(2011)	1.000
SFPQ M00809_2.00	Homo sapiens		UAGUG	RNA-Bind-n-Seq Dominguez et al.(2018)	0.730
SFPQ M00808_2.00	Homo sapiens		WGUAAN	RNA-Bind-n-Seq Dominguez et al.(2018)	0.730
SFPQ M00506_2.00	Homo sapiens	Sequence logo not available	UGGAGAGGAAC	SELEX Cook et al.(2011)	0.730
SFPQ M00190_2.00	Homo sapiens		KURRUKK	RNAcompete Ray et al.(2013)	0.730
For this family, RBPs with RBD identity > 0.7* will likely have a similar motif*
Motifs from training set RBPs that strongly contributed to the reconstructed motif
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	e-dist (% contribution)
SFPQ M00190_2.00	Homo sapiens		KURRUKK	RNAcompete Ray et al.(2013) RNCMPT00177	0.055 (90.91%)

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSOGAP00000004321	RRM	70	146	TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS
ENSOGAP00000004321	RRM	144	212	CHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSF
ENSOGAP00000020270	RRM	127	203	TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS
ENSOGAP00000020270	RRM	201	269	CHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSF

RNA contacting residues

Links
Other RRM family RBPs
Other *Otolemur garnettii* RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name	Species	Gene ID	Motif Evidence	RBD Identity	Action
csin103891	Clonorchis sinensis	csin103891	N	0.000
EmuJ_000378900	Echinococcus multilocularis	EmuJ_000378900	N	0.000
HmN_000962300	Hymenolepis microstoma	HmN_000962300	N	0.000
HNAJ_0000770401	Hymenolepis nana	HNAJ_0000770401	N	0.000
MCOS_0000611201	Mesocestoides corti	MCOS_0000611201	N	0.000
Sjc_0067080	Schistosoma japonicum	Sjc_0067080	N	0.000
TsM_001025800	Taenia solium	TsM_001025800	N	0.000
TTAC_0000155401	Hydatigera taeniaeformis	TTAC_0000155401	N	0.000