CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa023263m
(
Prunus persica
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ppa023263m
T01133_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa023263m
CCCH ZF
252
273
KPCLYFARGYCKNGTSCRFLHG
ppa023263m
RRM
402
461
DSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDARV
Links
Other
CCCH ZF,RRM
family RBPs
Other
Prunus persica
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG11337
Drosophila melanogaster
FBgn0039846
N
0.000
GA10930-RA
Drosophila pseudoobscura
FBgn0070986
N
0.000
GF17196
Drosophila ananassae
FBgn0094214
N
0.000
GG11868
Drosophila erecta
FBgn0104163
N
0.000
GH21615
Drosophila grimshawi
FBgn0129076
N
0.000
GI10566
Drosophila mojavensis
FBgn0133330
N
0.000
GM12088
Drosophila sechellia
FBgn0167029
N
0.000
GD16436
Drosophila simulans
FBgn0188051
N
0.000
GJ22920
Drosophila virilis
FBgn0210023
N
0.000
GK22421
Drosophila willistoni
FBgn0224400
N
0.000
GE23317
Drosophila yakuba
FBgn0240512
N
0.000