CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GM12088
(
Drosophila sechellia
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
FBgn0167029
T19933_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0193565
KH
320
377
SETVTVEPQQRAQLIGPSGLHMKRIYLETGTSLTAVDETHFNAFAPSQAAMDEAKELI
Links
Other
KH
family RBPs
Other
Drosophila sechellia
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD16436
Drosophila simulans
FBgn0188051
N
0.966
CG11337
Drosophila melanogaster
FBgn0039846
N
0.966
GE23317
Drosophila yakuba
FBgn0240512
N
0.966
GG11868
Drosophila erecta
FBgn0104163
N
0.948
GF17196
Drosophila ananassae
FBgn0094214
N
0.845
GK22421
Drosophila willistoni
FBgn0224400
N
0.845
GL27239
Drosophila persimilis
FBgn0164820
N
0.828
GA10930-RA
Drosophila pseudoobscura
FBgn0070986
N
0.828
GH21615
Drosophila grimshawi
FBgn0129076
N
0.810
GJ22920
Drosophila virilis
FBgn0210023
N
0.793
GI10566
Drosophila mojavensis
FBgn0133330
N
0.759