CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UNKL
(
Danio rerio
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSDARG00000037838
T02450_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000021006
CCCH ZF
70
93
YCTKYDETTGICPDGDDCPYLHRT
ENSDARP00000021006
CCCH ZF
276
302
YKSTKCNDMRQTGYCPRGPFCAFAHVE
Links
Other
CCCH ZF
family RBPs
Other
Danio rerio
RBPs
59 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNAPOd2T00018093001
Oikopleura dioica
SNAPOd2T00018093001
N
0.000
SNAPOd2T00018901001
Oikopleura dioica
SNAPOd2T00018901001
N
0.000
SNAPOd2T00020450001
Oikopleura dioica
SNAPOd2T00020450001
N
0.000
SNAPOd2T00026452001
Oikopleura dioica
SNAPOd2T00026452001
N
0.000
SNAPOd2T00027516001
Oikopleura dioica
SNAPOd2T00027516001
N
0.000