CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Tupaia belangeri
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTBEG00000004564
T03426_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000003924
CCCH ZF
1
19
YFMHGVCKEGDNCRYSHDL
ENSTBEP00000003924
CCCH ZF
23
48
PYGVVCKYFQRGYCIYGDRCRYEHSK
ENSTBEP00000003924
CCCH ZF
146
171
TKKQLCPYAAVGECRYGENCVYLHGD
Links
Other
CCCH ZF
family RBPs
Other
Tupaia belangeri
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_01555
Chaetomium globosum
CHGG_01555
N
0.000
estExt_fgenesh1_pg.C_120120
Neurospora tetrasperma
estExt_fgenesh1_pg.C_120120
N
0.000
estExt_Genewise1.C_21399
Myceliophthora thermophila
estExt_Genewise1.C_21399
N
0.000
estExt_GeneWisePlus.C_30660
Trichoderma reesei
estExt_GeneWisePlus.C_30660
N
0.000
e_gw1.14.516.1
Trichoderma atroviride
e_gw1.14.516.1
N
0.000
e_gw1.4.1466.1
Neurospora discreta
e_gw1.4.1466.1
N
0.000
e_gw1.4.2238.1
Thielavia terrestris
e_gw1.4.2238.1
N
0.000
fgenesh1_pm.C_scaffold_4000211
Cryphonectria parasitica
fgenesh1_pm.C_scaffold_4000211
N
0.000
fgenesh1_pm.sca_1_chr1_3_0000206
Nectria haematococca
fgenesh1_pm.sca_1_chr1_3_0000206
N
0.000
FGSG_11793
Fusarium graminearum
FGSG_11793
N
0.000
FOXG_00437
Fusarium oxysporum
FOXG_00437
N
0.000
FVEG_01075
Fusarium verticillioides
FVEG_01075
N
0.000
GLRG_04425
Colletotrichum graminicola
GLRG_04425
N
0.000
gw1.11.630.1
Trichoderma virens
gw1.11.630.1
N
0.000
MGG_04351
Magnaporthe oryzae
MGG_04351
N
0.000
Pa_1_7200
Podospora anserina
Pa_1_7200
N
0.000
Pc14g01320
Penicillium chrysogenum
Pc14g01320
N
0.000
VDAG_03182
Verticillium dahliae
VDAG_03182
N
0.000