fgenesh2_pg.scaffold_616000019 (Branchiostoma floridae)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_pg.scaffold_616000019 T05317_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_616000019 CCCH ZF 104 129
fgenesh2_pg.scaffold_616000019 CCCH ZF 154 174

Links

Other CCCH ZF family RBPs
Other Branchiostoma floridae RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL010535 Aedes aegypti AAEL010535 N 0.787
AGAP008634 Anopheles gambiae AGAP008634 N 0.787
estExt_Genewise1.C_350015 Capitella teleta estExt_Genewise1.C_350015 N 0.735
e_gw1.132.32.1 Postia placenta e_gw1.132.32.1 N 0.714
CG8635 Drosophila melanogaster FBgn0033317 N 0.830
GA21225-RA Drosophila pseudoobscura FBgn0081213 N 0.872
GF12572 Drosophila ananassae FBgn0089609 N 0.851
GG10627 Drosophila erecta FBgn0102935 N 0.830
GH21804 Drosophila grimshawi FBgn0129265 N 0.872
GI20775 Drosophila mojavensis FBgn0143510 N 0.851
GL11672 Drosophila persimilis FBgn0149281 N 0.872
GM20672 Drosophila sechellia FBgn0175554 N 0.830
GJ20510 Drosophila virilis FBgn0207650 N 0.851
GE22859 Drosophila yakuba FBgn0240063 N 0.830
Sjc_0049010 Schistosoma japonicum Sjc_0049010 N 0.755
Smp_099900 Schistosoma mansoni Smp_099900 N 0.755
XP_001191490.1 Strongylocentrotus purpuratus XP_001191490.1 N 0.755
XP_785608.2 Strongylocentrotus purpuratus XP_785608.2 N 0.755