estExt_Genewise1Plus.C_11035 (Sporobolomyces roseus)
CCHC ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00013 (KH_1) 		IPR001878
IPR018111 		estExt_Genewise1Plus.C_11035 T07047_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_11035 KH 249 320
estExt_Genewise1Plus.C_11035 CCHC ZF 358 375
estExt_Genewise1Plus.C_11035 CCHC ZF 383 400

Links

Other CCHC ZF,KH family RBPs
Other Sporobolomyces roseus RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CC1G_06433 Coprinopsis cinerea CC1G_06433 N 0.789
CNBG_0731 Cryptococcus neoformans CNBG_0731 N 0.833
estExt_fgenesh1_pm.C_50279 Schizophyllum commune estExt_fgenesh1_pm.C_50279 N 0.833
estExt_fgenesh1_pm.C_80273 Pleurotus ostreatus estExt_fgenesh1_pm.C_80273 N 0.780
estExt_fgenesh2_pm.C_30298 Agaricus bisporus estExt_fgenesh2_pm.C_30298 N 0.761
estExt_fgenesh2_pm.C_70506 Serpula lacrymans estExt_fgenesh2_pm.C_70506 N 0.807
estExt_fgenesh3_pm.C_200020 Postia placenta estExt_fgenesh3_pm.C_200020 N 0.789
estExt_fgenesh3_pm.C_870007 Postia placenta estExt_fgenesh3_pm.C_870007 N 0.789
estExt_Genewise1.C_110391 Heterobasidion annosum estExt_Genewise1.C_110391 N 0.789
estExt_Genewise1.C_130162 Tremella mesenterica estExt_Genewise1.C_130162 N 0.771
e_gww2.7.165.1 Phanerochaete chrysosporium e_gww2.7.165.1 N 0.780
gww1.11.161.1 Laccaria bicolor gww1.11.161.1 N 0.787
PGTG_00318 Puccinia graminis PGTG_00318 N 0.815
PTTG_08570 Puccinia triticina PTTG_08570 N 0.806