CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA19095
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA19095
T09748_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA19095
CCHC ZF
87
104
VTCYGCGEKGHIAPKCPK
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29629.m001425
Ricinus communis
29629.m001425
N
0.000
AC186319.4_FG002
Zea mays
AC186319.4_FG002
N
0.000
BGIOSIBCE027406
Oryza indica
BGIOSIBCE027406
N
0.000
BRADI3G20700
Brachypodium distachyon
BRADI3G20700
N
0.000
cassava24310.valid.m1
Manihot esculenta
cassava24310.valid.m1
N
0.000
cassava7031.valid.m1
Manihot esculenta
cassava7031.valid.m1
N
0.000
Cucsa.240780
Cucumis sativus
Cucsa.240780
N
0.000
Glyma13g11650.1
Glycine max
Glyma13g11650.1
N
0.000
GSVIVG00012784001
Vitis vinifera
GSVIVG00012784001
N
0.000
GSVIVG00014729001
Vitis vinifera
GSVIVG00014729001
N
0.000
LjSGA_018192.1
Lotus japonicus
LjSGA_018192.1
N
0.000
LOC_Os08g23120
Oryza sativa
LOC_Os08g23120
N
0.000
PDK_20s1371981g001
Phoenix dactylifera
PDK_20s1371981g001
N
0.000
PK22392.1
Cannabis sativa
PK22392.1
N
0.000
ppa007812m
Prunus persica
ppa007812m
N
0.000
SB03G027920
Sorghum bicolor
Sb03g027920
N
0.000