CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PGTG_13838
(
Puccinia graminis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
PGTG_13838
T08201_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGTT_13838
CCHC ZF
64
81
VTCYECGKKGHKSTKCPK
Links
Other
CCHC ZF
family RBPs
Other
Puccinia graminis
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PGTG_16926
Puccinia graminis
PGTG_16926
N
1.000
PGTG_16818
Puccinia graminis
PGTG_16818
N
1.000
PGTG_06776
Puccinia graminis
PGTG_06776
N
0.944
PGTG_18222
Puccinia graminis
PGTG_18222
N
0.889
LOC_Os09g09400
Oryza sativa
LOC_Os09g09400
N
0.722
LOC_Os11g24270
Oryza sativa
LOC_Os11g24270
N
0.722
CJA20544
Caenorhabditis japonica
CJA20544
N
0.722
CJA19095
Caenorhabditis japonica
CJA19095
N
0.722
CJA05016
Caenorhabditis japonica
CJA05016
N
0.722
CJA17358
Caenorhabditis japonica
CJA17358
N
0.722
CJA19667
Caenorhabditis japonica
CJA19667
N
0.722