CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RP11-1286E23.4
(
Homo sapiens
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSG00000229924
T10192_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000395848
CCHC ZF
42
56
LKCKNCGAFGHMARS
ENSP00000421131
CCHC ZF
42
56
LKCKNCGAFGHMARS
Links
Other
CCHC ZF
family RBPs
Other
Homo sapiens
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100395568
Callithrix jacchus
ENSCJAG00000033666
N
0.867
ENSCPOG00000026882
Cavia porcellus
ENSCPOG00000026882
N
0.867
ENSOCUG00000021017
Oryctolagus cuniculus
ENSOCUG00000021017
N
0.800
ENSOCUG00000023886
Oryctolagus cuniculus
ENSOCUG00000023886
N
0.800
ENSOCUG00000025650
Oryctolagus cuniculus
ENSOCUG00000025650
N
0.800
ENSPVAG00000010090
Pteropus vampyrus
ENSPVAG00000010090
N
0.733