CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCPOG00000026882
(
Cavia porcellus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSCPOG00000026882
T10071_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000015709
CCHC ZF
2
16
VKCKNCGAFGHMAKS
Links
Other
CCHC ZF
family RBPs
Other
Cavia porcellus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSOCUG00000025650
Oryctolagus cuniculus
ENSOCUG00000025650
N
0.933
ENSOCUG00000023886
Oryctolagus cuniculus
ENSOCUG00000023886
N
0.933
ENSOCUG00000021017
Oryctolagus cuniculus
ENSOCUG00000021017
N
0.933
LOC100395568
Callithrix jacchus
ENSCJAG00000033666
N
0.867
RP11-1286E23.4
Homo sapiens
ENSG00000229924
N
0.867
ENSPVAG00000010090
Pteropus vampyrus
ENSPVAG00000010090
N
0.800
ENSOPRG00000018641
Ochotona princeps
ENSOPRG00000018641
N
0.737
ENSOPRG00000018667
Ochotona princeps
ENSOPRG00000018667
N
0.737
ENSOPRG00000019113
Ochotona princeps
ENSOPRG00000019113
N
0.737