LOC_Os05g19550 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g19550 T11456_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g19550.1 CCHC ZF 251 268

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29765.m000746 Ricinus communis 29765.m000746 N 0.000
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.000
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.000
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.000
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.000
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.000
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.000
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.000
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.000
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.000
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.000
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.000
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.000
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.000
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.000
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.000
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.000
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.000
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.000
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.000
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.000
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.000
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.000
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.000
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.000
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.000
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.000
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.000
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.000
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.000
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.000
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.000
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.000
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.000
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.000
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.000
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.000
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.000
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.000
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.000
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.000
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.000
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.000
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.000
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.000
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.000
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.000
MDP0000256033 Malus x domestica MDP0000256033 N 0.000
MDP0000488248 Malus x domestica MDP0000488248 N 0.000
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.000
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.000
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.000
mgf001716m Mimulus guttatus mgf001716m N 0.000
mgf014829m Mimulus guttatus mgf014829m N 0.000
mgf019846m Mimulus guttatus mgf019846m N 0.000
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.000
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.000
PK26094.1 Cannabis sativa PK26094.1 N 0.000
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.000
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.000
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.000
ppa003557m Prunus persica ppa003557m N 0.000
ppa018635m Prunus persica ppa018635m N 0.000
SB01G008170 Sorghum bicolor Sb01g008170 N 0.000
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.000
SB07G006330 Sorghum bicolor Sb07g006330 N 0.000
SB09G000580 Sorghum bicolor Sb09g000580 N 0.000