CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os05g19550
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os05g19550
T11456_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g19550.1
CCHC ZF
251
268
LRCFECGEKGHFASKCPS
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29765.m000746
Ricinus communis
29765.m000746
N
0.000
BGIOSIBCE013986
Oryza indica
BGIOSIBCE013986
N
0.000
BGIOSIBCE017245
Oryza indica
BGIOSIBCE017245
N
0.000
BGIOSIBCE026930
Oryza indica
BGIOSIBCE026930
N
0.000
BRADI1G05970
Brachypodium distachyon
BRADI1G05970
N
0.000
BRADI1G74560
Brachypodium distachyon
BRADI1G74560
N
0.000
BRADI3G06027
Brachypodium distachyon
BRADI3G06027
N
0.000
BRADI4G02150
Brachypodium distachyon
BRADI4G02150
N
0.000
BRADI5G01317
Brachypodium distachyon
BRADI5G01317
N
0.000
cassava12386.valid.m1
Manihot esculenta
cassava12386.valid.m1
N
0.000
cassava12387.valid.m1
Manihot esculenta
cassava12387.valid.m1
N
0.000
cassava12388.valid.m1
Manihot esculenta
cassava12388.valid.m1
N
0.000
cassava12389.valid.m1
Manihot esculenta
cassava12389.valid.m1
N
0.000
cassava13322.valid.m1
Manihot esculenta
cassava13322.valid.m1
N
0.000
cassava13323.valid.m1
Manihot esculenta
cassava13323.valid.m1
N
0.000
cassava13324.valid.m1
Manihot esculenta
cassava13324.valid.m1
N
0.000
cassava14932.m1
Manihot esculenta
cassava14932.m1
N
0.000
cassava30727.valid.m1
Manihot esculenta
cassava30727.valid.m1
N
0.000
cassava30728.valid.m1
Manihot esculenta
cassava30728.valid.m1
N
0.000
cassava30729.valid.m1
Manihot esculenta
cassava30729.valid.m1
N
0.000
cassava35657.valid.m1
Manihot esculenta
cassava35657.valid.m1
N
0.000
cassava35658.valid.m1
Manihot esculenta
cassava35658.valid.m1
N
0.000
cassava35659.valid.m1
Manihot esculenta
cassava35659.valid.m1
N
0.000
cassava35660.valid.m1
Manihot esculenta
cassava35660.valid.m1
N
0.000
cassava35661.valid.m1
Manihot esculenta
cassava35661.valid.m1
N
0.000
cassava35662.valid.m1
Manihot esculenta
cassava35662.valid.m1
N
0.000
cassava35663.valid.m1
Manihot esculenta
cassava35663.valid.m1
N
0.000
cassava35665.valid.m1
Manihot esculenta
cassava35665.valid.m1
N
0.000
cassava35666.valid.m1
Manihot esculenta
cassava35666.valid.m1
N
0.000
cassava35667.valid.m1
Manihot esculenta
cassava35667.valid.m1
N
0.000
cassava38866.m1
Manihot esculenta
cassava38866.m1
N
0.000
cassava38867.m1
Manihot esculenta
cassava38867.m1
N
0.000
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.000
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.000
chr6.CM0885.260.nc
Lotus japonicus
chr6.CM0885.260.nc
N
0.000
chr6.CM0885.320.nc
Lotus japonicus
chr6.CM0885.320.nc
N
0.000
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.000
Glyma08g24210.1
Glycine max
Glyma08g24210.1
N
0.000
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.000
GRMZM2G076062
Zea mays
GRMZM2G076062
N
0.000
GRMZM2G126338
Zea mays
GRMZM2G126338
N
0.000
GRMZM2G330019
Zea mays
GRMZM2G330019
N
0.000
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.000
GSVIVG00023248001
Vitis vinifera
GSVIVG00023248001
N
0.000
LjSGA_044186.1
Lotus japonicus
LjSGA_044186.1
N
0.000
LjSGA_073042.1
Lotus japonicus
LjSGA_073042.1
N
0.000
LOC_Os03g53670
Oryza sativa
LOC_Os03g53670
N
0.000
LOC_Os04g04000
Oryza sativa
LOC_Os04g04000
N
0.000
LOC_Os05g01520
Oryza sativa
LOC_Os05g01520
N
0.000
LOC_Os08g12760
Oryza sativa
LOC_Os08g12760
N
0.000
MDP0000256033
Malus x domestica
MDP0000256033
N
0.000
MDP0000488248
Malus x domestica
MDP0000488248
N
0.000
Medtr2g005610
Medicago truncatula
Medtr2g005610
N
0.000
Medtr2g085380
Medicago truncatula
Medtr2g085380
N
0.000
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.000
mgf001716m
Mimulus guttatus
mgf001716m
N
0.000
mgf014829m
Mimulus guttatus
mgf014829m
N
0.000
mgf019846m
Mimulus guttatus
mgf019846m
N
0.000
PDK_20s1308332g001
Phoenix dactylifera
PDK_20s1308332g001
N
0.000
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.000
PK26094.1
Cannabis sativa
PK26094.1
N
0.000
B9N0D5_POPTR
Populus trichocarpa
POPTR_0004s23250
N
0.000
B9HII9_POPTR
Populus trichocarpa
POPTR_0008s09960
N
0.000
B9N770_POPTR
Populus trichocarpa
POPTR_0022s00680
N
0.000
ppa003557m
Prunus persica
ppa003557m
N
0.000
ppa018635m
Prunus persica
ppa018635m
N
0.000
SB01G008170
Sorghum bicolor
Sb01g008170
N
0.000
Sb01g046550
Sorghum bicolor
Sb01g046550
N
0.000
SB07G006330
Sorghum bicolor
Sb07g006330
N
0.000
SB09G000580
Sorghum bicolor
Sb09g000580
N
0.000