CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os07g33150
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g33150
T11855_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g33150.1
CCHC ZF
273
290
RACFNCGEYGHFIADCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB01983.1
Alternaria brassicicola
AB01983.1
N
0.000
ARB_03559
Arthroderma benhamiae
ARB_03559
N
0.000
ACLA_054290
Aspergillus clavatus
CADACLAG00005245
N
0.000
An14g00750
Aspergillus niger
CADANGAG00011011
N
0.000
ATEG_02228
Aspergillus terreus
CADATEAG00000017
N
0.000
CIMG_08661
Coccidioides immitis
CIMG_08661
N
0.000
CPSG_05597
Coccidioides posadasii
CPSG_05597
N
0.000
estExt_Genewise1.C_30334
Cochliobolus heterostrophus C5
estExt_Genewise1.C_30334
N
0.000
e_gw1.3.693.1
Trichoderma reesei
e_gw1.3.693.1
N
0.000
fgenesh1_pg.C_scaffold_13000098
Trichoderma virens
fgenesh1_pg.C_scaffold_13000098
N
0.000
fgenesh1_pg.C_scaffold_8000400
Trichoderma atroviride
fgenesh1_pg.C_scaffold_8000400
N
0.000
fgenesh1_pm.00795_#_61
Aspergillus carbonarius
fgenesh1_pm.00795_#_61
N
0.000
FGSG_05263
Fusarium graminearum
FGSG_05263
N
0.000
FOXG_08443
Fusarium oxysporum
FOXG_08443
N
0.000
MCYG_02556
Microsporum canis
MCYG_02556
N
0.000
Pc13g06240
Penicillium chrysogenum
Pc13g06240
N
0.000
PMAA_085380
Penicillium marneffei
PMAA_085380
N
0.000
TERG_05645
Trichophyton rubrum
TERG_05645
N
0.000
TESG_07117
Trichophyton tonsurans
TESG_07117
N
0.000
TRV_06609
Trichophyton verrucosum
TRV_06609
N
0.000
UREG_02651
Uncinocarpus reesii
UREG_02651
N
0.000