CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os08g16180
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os08g16180
T11947_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os08g16180.1
CCHC ZF
496
513
VVCFNCGDPGHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
598 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_1000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1000001
N
0.000
fgenesh1_pg.C_scaffold_1000002
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1000002
N
0.000
fgenesh1_pg.C_scaffold_101000026
Phytophthora ramorum
fgenesh1_pg.C_scaffold_101000026
N
0.000
fgenesh1_pg.C_scaffold_103000043
Phytophthora ramorum
fgenesh1_pg.C_scaffold_103000043
N
0.000
fgenesh1_pg.C_scaffold_120000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_120000001
N
0.000
fgenesh1_pg.C_scaffold_135000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_135000001
N
0.000
fgenesh1_pg.C_scaffold_1402000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1402000001
N
0.000
fgenesh1_pg.C_scaffold_1567000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1567000001
N
0.000
fgenesh1_pg.C_scaffold_1930000001
Phytophthora ramorum
fgenesh1_pg.C_scaffold_1930000001
N
0.000
fgenesh1_pg.C_scaffold_4000232
Phytophthora ramorum
fgenesh1_pg.C_scaffold_4000232
N
0.000
fgenesh1_pg.C_scaffold_77000052
Phytophthora ramorum
fgenesh1_pg.C_scaffold_77000052
N
0.000
s_443293
Phytophthora sojae
s_443293
N
0.000
s_446599
Phytophthora sojae
s_446599
N
0.000
s_449661
Phytophthora sojae
s_449661
N
0.000
s_452743
Phytophthora sojae
s_452743
N
0.000
s_453001
Phytophthora sojae
s_453001
N
0.000
s_455828
Phytophthora sojae
s_455828
N
0.000
s_456595
Phytophthora sojae
s_456595
N
0.000
s_461961
Phytophthora sojae
s_461961
N
0.000
s_462220
Phytophthora sojae
s_462220
N
0.000
s_464317
Phytophthora sojae
s_464317
N
0.000
s_464326
Phytophthora sojae
s_464326
N
0.000
s_464327
Phytophthora sojae
s_464327
N
0.000
s_467676
Phytophthora sojae
s_467676
N
0.000
s_472278
Phytophthora sojae
s_472278
N
0.000
s_474165
Phytophthora sojae
s_474165
N
0.000
s_476083
Phytophthora sojae
s_476083
N
0.000
s_477590
Phytophthora sojae
s_477590
N
0.000
s_477670
Phytophthora sojae
s_477670
N
0.000
s_478011
Phytophthora sojae
s_478011
N
0.000
s_478021
Phytophthora sojae
s_478021
N
0.000
s_516690
Phytophthora sojae
s_516690
N
0.000