fgenesh1_pg.C_scaffold_1567000001 (Phytophthora ramorum)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_1567000001 T13781_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1567000001 CCHC ZF 272 289

Links

Other CCHC ZF family RBPs
Other Phytophthora ramorum RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_101000026 Phytophthora ramorum fgenesh1_pg.C_scaffold_101000026 N 1.000
fgenesh1_pg.C_scaffold_1000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_1000002 N 1.000
fgenesh1_pg.C_scaffold_1930000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1930000001 N 1.000
fgenesh1_pg.C_scaffold_103000043 Phytophthora ramorum fgenesh1_pg.C_scaffold_103000043 N 1.000
fgenesh1_pg.C_scaffold_1000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1000001 N 1.000
fgenesh1_pg.C_scaffold_4000232 Phytophthora ramorum fgenesh1_pg.C_scaffold_4000232 N 1.000
fgenesh1_pg.C_scaffold_120000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_120000001 N 1.000
fgenesh1_pg.C_scaffold_77000052 Phytophthora ramorum fgenesh1_pg.C_scaffold_77000052 N 1.000
fgenesh1_pg.C_scaffold_1402000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1402000001 N 1.000
s_462220 Phytophthora sojae s_462220 N 0.944
s_456595 Phytophthora sojae s_456595 N 0.944
s_516690 Phytophthora sojae s_516690 N 0.944
s_476083 Phytophthora sojae s_476083 N 0.889
s_474165 Phytophthora sojae s_474165 N 0.889
s_478011 Phytophthora sojae s_478011 N 0.889
s_478021 Phytophthora sojae s_478021 N 0.889
s_477590 Phytophthora sojae s_477590 N 0.889
s_464327 Phytophthora sojae s_464327 N 0.889
s_453001 Phytophthora sojae s_453001 N 0.889
s_449661 Phytophthora sojae s_449661 N 0.889
s_443293 Phytophthora sojae s_443293 N 0.889
s_438552 Phytophthora sojae s_438552 N 0.889
s_472278 Phytophthora sojae s_472278 N 0.889
s_455828 Phytophthora sojae s_455828 N 0.889
s_461961 Phytophthora sojae s_461961 N 0.889
s_467676 Phytophthora sojae s_467676 N 0.889
s_464317 Phytophthora sojae s_464317 N 0.889
s_464326 Phytophthora sojae s_464326 N 0.889
s_452743 Phytophthora sojae s_452743 N 0.833
s_446599 Phytophthora sojae s_446599 N 0.833
s_477670 Phytophthora sojae s_477670 N 0.778
fgenesh1_pg.C_scaffold_135000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000001 N 0.778