CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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177495
(
Helobdella robusta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
177495
T13169_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
177495
CCHC ZF
227
244
PKCWNCEEKGHLRPDCKQ
Links
Other
CCHC ZF
family RBPs
Other
Helobdella robusta
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
161499
Helobdella robusta
161499
N
0.722
162956
Helobdella robusta
162956
N
0.722
163780
Helobdella robusta
163780
N
0.722
163802
Helobdella robusta
163802
N
0.778
164998
Helobdella robusta
164998
N
0.778
166051
Helobdella robusta
166051
N
0.722
169254
Helobdella robusta
169254
N
0.722
169322
Helobdella robusta
169322
N
0.722
174236
Helobdella robusta
174236
N
0.722
176092
Helobdella robusta
176092
N
0.722
177499
Helobdella robusta
177499
N
0.722
179452
Helobdella robusta
179452
N
0.722
180343
Helobdella robusta
180343
N
0.722
180381
Helobdella robusta
180381
N
0.722
180906
Helobdella robusta
180906
N
0.722
182130
Helobdella robusta
182130
N
0.889
182469
Helobdella robusta
182469
N
0.722
182523
Helobdella robusta
182523
N
0.722
183398
Helobdella robusta
183398
N
0.722
184400
Helobdella robusta
184400
N
0.722
184581
Helobdella robusta
184581
N
0.722