CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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182469
(
Helobdella robusta
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
182469
T13183_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
182469
CCHC ZF
656
673
PQCWICGEKGHLRRDCKH
Links
Other
CCHC ZF
family RBPs
Other
Helobdella robusta
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
163780
Helobdella robusta
163780
N
1.000
176092
Helobdella robusta
176092
N
1.000
174236
Helobdella robusta
174236
N
1.000
182523
Helobdella robusta
182523
N
1.000
169254
Helobdella robusta
169254
N
1.000
166051
Helobdella robusta
166051
N
1.000
169322
Helobdella robusta
169322
N
1.000
177499
Helobdella robusta
177499
N
1.000
180381
Helobdella robusta
180381
N
1.000
180906
Helobdella robusta
180906
N
1.000
183398
Helobdella robusta
183398
N
1.000
184581
Helobdella robusta
184581
N
1.000
180343
Helobdella robusta
180343
N
1.000
179452
Helobdella robusta
179452
N
1.000
175920
Helobdella robusta
175920
N
0.944
174284
Helobdella robusta
174284
N
0.944
164998
Helobdella robusta
164998
N
0.944
160995
Helobdella robusta
160995
N
0.944
184490
Helobdella robusta
184490
N
0.944
184400
Helobdella robusta
184400
N
0.944
161475
Helobdella robusta
161475
N
0.944
161499
Helobdella robusta
161499
N
0.944
163701
Helobdella robusta
163701
N
0.944
162956
Helobdella robusta
162956
N
0.944
161590
Helobdella robusta
161590
N
0.889
182130
Helobdella robusta
182130
N
0.833
177495
Helobdella robusta
177495
N
0.722
163802
Helobdella robusta
163802
N
0.722