fgenesh1_pg.scaffold_84000013 (Physcomitrella patens)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.scaffold_84000013 T14127_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_84000013 CCHC ZF 27 42

Links

Other CCHC ZF family RBPs
Other Physcomitrella patens RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
3821.m00489 Tetrahymena thermophila 3821.m00489 N 0.000
ppil4 Danio rerio ENSDARG00000043854 N 0.000
PPIL4 Gallus gallus ENSGALG00000012364 N 0.000
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.000
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.000
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.000
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.000
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.000
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.000
estExt_Genewise1.C_23809 Thielavia terrestris estExt_Genewise1.C_23809 N 0.000
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.000
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.000
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.000
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.000