estExt_fgenesh2_pm.C_1170007 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pm.C_1170007 T50932_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pm.C_1170007 RRM 244 314

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.859
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.845
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.845
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.845
ppil4 Danio rerio ENSDARG00000043854 N 0.845
PPIL4 Gallus gallus ENSGALG00000012364 N 0.845
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.831
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.831
GF18772 Drosophila ananassae FBgn0095789 N 0.831
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.831
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.831
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.831
GH18460 Drosophila grimshawi FBgn0125927 N 0.831
GI24038 Drosophila mojavensis FBgn0146761 N 0.831
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.831
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.831
GL13859 Drosophila persimilis FBgn0151464 N 0.831
GJ23668 Drosophila virilis FBgn0210765 N 0.831
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.817
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.817
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.817
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.817
Ppil4 Mus musculus ENSMUSG00000015757 N 0.817
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.817
PPIL4 Homo sapiens ENSG00000131013 N 0.817
PPIL4 Equus caballus ENSECAG00000021819 N 0.817
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.817
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.817
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.817
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.817
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.817
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.817
CG5808 Drosophila melanogaster FBgn0027617 N 0.817
GE10772 Drosophila yakuba FBgn0228614 N 0.817
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.817
PHUM268300 Pediculus humanus PHUM268300 N 0.817
GG12319 Drosophila erecta FBgn0104609 N 0.817
GD18267 Drosophila simulans FBgn0189800 N 0.817
GM23461 Drosophila sechellia FBgn0178328 N 0.817
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.817
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.817
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.817
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.817
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.817
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.817
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.817
PPIL4 Sorex araneus ENSSARG00000011244 N 0.817
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.803
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.803
NCU10166 Neurospora crassa NCU10166 N 0.803
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.803
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.803
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.803
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.803
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.803
LOAG_08216 Loa loa LOAG_08216 N 0.803
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.803
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.803
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.789
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.789
AAEL005690 Aedes aegypti AAEL005690 N 0.789
GK13166 Drosophila willistoni FBgn0215175 N 0.789
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.789
AGAP008136 Anopheles gambiae AGAP008136 N 0.789
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.789
AAEL005541 Aedes aegypti AAEL005541 N 0.789
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.789
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.789
fgeneshTA2_pg.C_scaffold_8000290 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000290 N 0.789
PPIL4 Callithrix jacchus ENSCJAG00000019613 N 0.778
CpipJ_CPIJ000912 Culex pipiens CpipJ_CPIJ000912 N 0.775
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.775
CPIJ000912 Culex quinquefasciatus CPIJ000912 N 0.775
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.775
fgenesh1_pm.C_scaffold_9000117 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_9000117 N 0.775
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.775
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.775
Aqu1.223583 Amphimedon queenslandica Aqu1.223583 N 0.775
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.775
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.775
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.775
e_gw1.20.215.1 Phycomyces blakesleeanus e_gw1.20.215.1 N 0.775
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.775
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.761
XP_001192414.1 Strongylocentrotus purpuratus XP_001192414.1 N 0.761
XP_001180629.1 Strongylocentrotus purpuratus XP_001180629.1 N 0.761
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.761
XP_782627.2 Strongylocentrotus purpuratus XP_782627.2 N 0.761
ARB_04672 Arthroderma benhamiae ARB_04672 N 0.761
ATEG_01850 Aspergillus terreus CADATEAG00001841 N 0.761
EAT81165.2 Phaeosphaeria nodorum EAT81165.2 N 0.761
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.761
MCYG_06073 Microsporum canis MCYG_06073 N 0.761
gw1.13.70.1 Lottia gigantea gw1.13.70.1 N 0.761
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.761
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.761
PTRG_04608 Pyrenophora tritici repentis PTRG_04608 N 0.761
TEQG_07016 Trichophyton equinum TEQG_07016 N 0.761
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.761
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.761
SNOG_11457 Stagonospora nodorum SNOG_11457 N 0.761
83285 Helobdella robusta 83285 N 0.761
MGYG_05886 Microsporum gypseum MGYG_05886 N 0.761
TERG_06028 Trichophyton rubrum TERG_06028 N 0.761
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.761
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.761
PMAA_010740 Penicillium marneffei PMAA_010740 N 0.761
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.761
TRV_03115 Trichophyton verrucosum TRV_03115 N 0.761
estExt_fgenesh1_kg.C_170006 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_170006 N 0.746
Pc21g11960 Penicillium chrysogenum Pc21g11960 N 0.746
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.746
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.746
AB03196.1 Alternaria brassicicola AB03196.1 N 0.746
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.746
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.746
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.746
estExt_Genewise1.C_23809 Thielavia terrestris estExt_Genewise1.C_23809 N 0.746
fgenesh1_pm.C_scaffold_1000049 Schizophyllum commune fgenesh1_pm.C_scaffold_1000049 N 0.746
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.746
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.746
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.746
Minc10084 Meloidogyne incognita Minc10084 N 0.746
Smp_165540 Schistosoma mansoni Smp_165540 N 0.746
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.746
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.746
An12g00490 Aspergillus niger CADANGAG00009498 N 0.746
AO090038000594 Aspergillus oryzae CADAORAG00009343 N 0.746
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.746
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.746
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.746
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.746
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.746
estExt_fgenesh3_pg.C_910016 Postia placenta estExt_fgenesh3_pg.C_910016 N 0.746
DGIL_AUG5s502g5t1 Acyrtosiphon pisum DGIL_AUG5s502g5t1 N 0.746
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.746
AFLA_071340 Aspergillus flavus CADAFLAG00008558 N 0.746
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.746
CAOG_07850 Capsaspora owczarzaki CAOG_07850 N 0.746
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.746
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.732
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.732
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.732
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.732
e_gww1.4.788.1 Laccaria bicolor e_gww1.4.788.1 N 0.732
AMSG_10031 Thecamonas trahens AMSG_10031 N 0.732
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.732
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.732
UM03490 Ustilago maydis UM03490 N 0.732
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.732
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.732
CJA06296 Caenorhabditis japonica CJA06296 N 0.732
e_gw1.4.2113.1 Pleurotus ostreatus e_gw1.4.2113.1 N 0.732
estExt_fgenesh2_kg.C_140159 Agaricus bisporus estExt_fgenesh2_kg.C_140159 N 0.732
EDO07903.1 Babesia bovis EDO07903.1 N 0.732
e_gww2.22.65.1 Phanerochaete chrysosporium e_gww2.22.65.1 N 0.718
estExt_fgenesh1_kg.C_40083 Melampsora laricis populina estExt_fgenesh1_kg.C_40083 N 0.718
PGTG_10482 Puccinia graminis PGTG_10482 N 0.718
CRE29496 Caenorhabditis remanei CRE29496 N 0.718
SNAPOd2T00004354001 Oikopleura dioica SNAPOd2T00004354001 N 0.718
SOCG_02586 Schizosaccharomyces octosporus SOCG_02586 N 0.718
PITG_08368 Phytophthora infestans PITG_08368 N 0.718
PTTG_06854 Puccinia triticina PTTG_06854 N 0.718
CBN08292 Caenorhabditis brenneri CBN08292 N 0.718
Chro.80276 Cryptosporidium hominis Chro.80276 N 0.718
e_gw1.4.370.1 Sporobolomyces roseus e_gw1.4.370.1 N 0.718
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.718
PierreAnnot2.00074 Micromonas pusilla PierreAnnot2.00074 N 0.718
GSPATP00006636001 Paramecium tetraurelia GSPATP00006636001 N 0.718
fgenesh2_pm.4_#_1016 Serpula lacrymans fgenesh2_pm.4_#_1016 N 0.718
gwEuk.85.2.1 Phytophthora ramorum gwEuk.85.2.1 N 0.718
sig-7 Caenorhabditis elegans F39H2.2 N 0.718
s_517330 Phytophthora sojae s_517330 N 0.718
PredSwiss_ASS2010_933.2 Pneumocystis carinii PredSwiss_ASS2010_933.2 N 0.718
GLRG_06614 Colletotrichum graminicola GLRG_06614 N 0.718
CBG12494 Caenorhabditis briggsae CBG12494 N 0.718
gw1.1.325.1 Phytophthora capsici gw1.1.325.1 N 0.718
PredSwiss_CON599.3 Pneumocystis carinii PredSwiss_CON599.3 N 0.718
cgd8_2350 Cryptosporidium parvum cgd8_2350 N 0.718
EIN_223600 Entamoeba invadens EIN_223600 N 0.704
TGGT1_083150 Toxoplasma gondii TGGT1_083150 N 0.704
TGME49_027850 Toxoplasma gondii TGME49_027850 N 0.704
TGVEG_068650 Toxoplasma gondii TGVEG_068650 N 0.704
PGTG_14680 Puccinia graminis PGTG_14680 N 0.704