CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSTUMT00002439001
(
Tuber melanosporum
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
GSTUMT00002439001
T15847_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSTUMT00002439001
CCHC ZF
257
274
GECFECGKTGHMAKNCPT
Links
Other
CCHC ZF
family RBPs
Other
Tuber melanosporum
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os03g23190
Oryza sativa
LOC_Os03g23190
N
0.000
LOC_Os05g17280
Oryza sativa
LOC_Os05g17280
N
0.000
LOC_Os05g17350
Oryza sativa
LOC_Os05g17350
N
0.000
LOC_Os06g16850
Oryza sativa
LOC_Os06g16850
N
0.000
LOC_Os07g25850
Oryza sativa
LOC_Os07g25850
N
0.000
LOC_Os09g14330
Oryza sativa
LOC_Os09g14330
N
0.000
LOC_Os09g14370
Oryza sativa
LOC_Os09g14370
N
0.000