YBOX1_CHICK (Gallus gallus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSGALG00000004848 T16867_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000007728 CSD 3 73
ENSGALP00000038395 CSD 7 71
ENSGALP00000038408 CSD 3 73

Links

Other CSD family RBPs
Other Gallus gallus RBPs

219 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
133388 Helobdella robusta 133388 I 0.736
146547 Helobdella robusta 146547 I 0.722
AAA49715 Xenopus laevis AAA49715 I 1.000
AAA49716 Xenopus laevis AAA49716 I 0.958
AAA49924 Xenopus laevis AAA49924 I 0.944
AAEL001375 Aedes aegypti AAEL001375 I 0.764
AAH41191 Xenopus laevis AAH41191 I 1.000
AAH42217 Xenopus laevis AAH42217 I 1.000
AAI06324 Xenopus laevis AAI06324 I 1.000
AAI30161 Xenopus laevis AAI30161 I 1.000
AAI55914 Xenopus laevis AAI55914 I 0.944
AAI55915 Xenopus laevis AAI55915 I 0.958
AAI69704 Xenopus laevis AAI69704 I 0.958
ybx2-a Xenopus laevis AAI69706 D 0.958
AGAP006108 Anopheles gambiae AGAP006108 I 0.764
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.833
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.833
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.833
Ame_R016025 Ailuropoda melanoleuca Ame_R016025 I 0.788
Ame_R019252 Ailuropoda melanoleuca Ame_R019252 I 0.773
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.778
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.736
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.806
Bm1_57515 Brugia malayi Bm1_57515 I 0.764
CAA42778 Xenopus laevis CAA42778 I 1.000
CBG02981 Caenorhabditis briggsae CBG02981 I 0.736
CBN16711 Caenorhabditis brenneri CBN16711 I 0.750
CJA05984 Caenorhabditis japonica CJA05984 I 0.722
CRE01789 Caenorhabditis remanei CRE01789 I 0.750
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.819
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.972
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.958
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 1.000
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 1.000
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.944
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 1.000
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.851
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.847
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.986
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 1.000
YBX2 Canis familiaris ENSCAFG00000016128 I 0.958
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.792
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.792
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 1.000
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.795
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.806
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 1.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.861
ENSCJAG00000009207 Callithrix jacchus ENSCJAG00000009207 I 0.722
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.972
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.958
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.806
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.889
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 1.000
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.861
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.892
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.944
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.889
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.930
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.778
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.958
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 1.000
CSDA Cavia porcellus ENSCPOG00000011329 I 1.000
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.808
ybx1 Danio rerio ENSDARG00000004757 I 1.000
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.767
Csda Dipodomys ordii ENSDORG00000009103 I 1.000
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.740
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 1.000
LOC100072964 Equus caballus ENSECAG00000009996 I 0.958
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.986
LOC100065107 Equus caballus ENSECAG00000013777 I 1.000
LOC100067336 Equus caballus ENSECAG00000023592 I 1.000
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 1.000
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.944
CSDA Erinaceus europaeus ENSEEUG00000010415 I 1.000
CSDA Echinops telfairi ENSETEG00000002557 I 1.000
ENSETEG00000004125 Echinops telfairi ENSETEG00000004125 I 0.773
YBX2 Echinops telfairi ENSETEG00000014271 I 0.740
YBX1 Echinops telfairi ENSETEG00000014789 I 0.736
CSDA Felis catus ENSFCAG00000018959 I 0.773
YBX2 Homo sapiens ENSG00000006047 D 0.944
CSDA Homo sapiens ENSG00000060138 I 1.000
YB-1 Homo sapiens ENSG00000065978 D 1.000
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 1.000
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.849
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 1.000
CSDA Gorilla gorilla ENSGGOG00000001352 I 1.000
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.821
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.944
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.972
YBX1 Loxodonta africana ENSLAFG00000007597 I 1.000
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.958
CSDA Loxodonta africana ENSLAFG00000017247 I 1.000
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.764
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 1.000
CSDA Microcebus murinus ENSMICG00000004602 I 0.859
YBX2 Microcebus murinus ENSMICG00000012453 I 0.754
YBX1 Microcebus murinus ENSMICG00000014984 I 1.000
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.847
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.889
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.972
CSDA Myotis lucifugus ENSMLUG00000007476 I 1.000
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 1.000
CSDA Macaca mulatta ENSMMUG00000022469 I 1.000
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.958
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.986
YBX1 Monodelphis domestica ENSMODG00000017214 I 1.000
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.944
CSDA Monodelphis domestica ENSMODG00000018248 I 0.986
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.944
Ybx2 Mus musculus ENSMUSG00000018554 I 0.958
Ybx1 Mus musculus ENSMUSG00000028639 I 1.000
Csda Mus musculus ENSMUSG00000030189 I 1.000
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 1.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 1.000
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.818
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.779
YBOX1_RABIT Oryctolagus cuniculus ENSOCUG00000028047 I 0.800
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.754
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.819
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.819
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.958
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 1.000
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.849
YBX2 Oryzias latipes ENSORLG00000018683 I 0.708
CSDA Procavia capensis ENSPCAG00000001397 I 0.930
YBX2 Procavia capensis ENSPCAG00000008019 I 0.958
YBX1 Procavia capensis ENSPCAG00000008397 I 0.773
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.831
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 1.000
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 1.000
CSDA Pan troglodytes ENSPTRG00000004681 I 1.000
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.944
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 1.000
CSDA Pteropus vampyrus ENSPVAG00000006740 I 1.000
Csda Rattus norvegicus ENSRNOG00000005480 I 1.000
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.972
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.792
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.958
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.722
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.986
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 1.000
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.944
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.764
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.861
YBX2 Sorex araneus ENSSARG00000000488 I 0.944
ENSSARG00000007896 Sorex araneus ENSSARG00000007896 I 0.773
YBX1 Sorex araneus ENSSARG00000012628 I 0.792
CSDA Sus scrofa ENSSSCG00000000633 I 1.000
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.944
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.806
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.861
YBX2 Sus scrofa ENSSSCG00000017938 I 0.958
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 1.000
CSDA Spermophilus tridecemlineatus ENSSTOG00000002108 I 0.758
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.958
CSDA Tupaia belangeri ENSTBEG00000012570 I 1.000
CSDA Taeniopygia guttata ENSTGUG00000012047 I 1.000
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 1.000
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.836
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 1.000
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.836
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 1.000
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.806
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.873
CSDA Tursiops truncatus ENSTTRG00000008045 I 0.785
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.740
YBX1 Vicugna pacos ENSVPAG00000000068 I 1.000
CSDA Vicugna pacos ENSVPAG00000000876 I 0.859
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.754
ybx1 Xenopus tropicalis ENSXETG00000013436 I 1.000
csda Xenopus tropicalis ENSXETG00000016239 I 0.958
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.764
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.875
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.930
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.792
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.778
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.758
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.778
cey-1 Caenorhabditis elegans F33A8.3 I 0.750
yps Drosophila melanogaster FBgn0022959 I 0.792
GF10852 Drosophila ananassae FBgn0087892 I 0.806
GH16919 Drosophila grimshawi FBgn0124390 I 0.806
GI13673 Drosophila mojavensis FBgn0136428 I 0.806
GL15684 Drosophila persimilis FBgn0153288 I 0.806
GM24682 Drosophila sechellia FBgn0179545 I 0.792
GD12750 Drosophila simulans FBgn0184477 I 0.792
GJ14010 Drosophila virilis FBgn0201228 I 0.806
GK16710 Drosophila willistoni FBgn0218712 I 0.806
GE20150 Drosophila yakuba FBgn0237472 I 0.792
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.806
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.722
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.750
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.806
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.708
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.778
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.778
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.712
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.875
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.778
ISCW005281 Ixodes scapularis ISCW005281 I 0.806
LOAG_11791 Loa loa LOAG_11791 I 0.742
Minc12652 Meloidogyne incognita Minc12652 I 0.708
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.806
P21573 Xenopus laevis P21573 I 1.000
P21574 Xenopus laevis P21574 I 0.958
P45441 Xenopus laevis P45441 I 0.944
PHUM156710 Pediculus humanus PHUM156710 I 0.819
PHUM156720 Pediculus humanus PHUM156720 I 0.806
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.778
Q00436 Xenopus laevis Q00436 I 1.000
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.806
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.764
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.819
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.861
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.861
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.819