YBOX1_CHICK (Gallus gallus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSGALG00000004848 T16867_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000007728 CSD 3 73
ENSGALP00000038395 CSD 7 71
ENSGALP00000038408 CSD 3 73

Links

Other CSD family RBPs
Other Gallus gallus RBPs

219 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
163427 Helobdella robusta 163427 N 0.000
AAEL004259 Aedes aegypti AAEL004259 N 0.000
AGAP006591 Anopheles gambiae AGAP006591 N 0.000
CPIJ011213 Culex quinquefasciatus CPIJ011213 N 0.000
CpipJ_CPIJ011213 Culex pipiens CpipJ_CPIJ011213 N 0.000
DGIL_AUG5s14530g4t1 Acyrtosiphon pisum DGIL_AUG5s14530g4t1 N 0.000
estExt_Genewise1Plus.C_550012 Capitella teleta estExt_Genewise1Plus.C_550012 N 0.000
e_gw1.29.67.1 Daphnia pulex e_gw1.29.67.1 N 0.000
e_gw1.8.742.1 Lottia gigantea e_gw1.8.742.1 N 0.000