CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP006591
(
Anopheles gambiae
)
CCHC ZF,CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD)
IPR001878
IPR002059
AGAP006591
T06747_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP006591-PA
CSD
41
107
PRRGRCKWFNVVKGWGFITPDDGGQEVFVHQSVIQMGGFRSLGENEEVEFESKLSAKGYEATSVYGP
AGAP006591-PA
CCHC ZF
129
145
VRCYNCGEFANHIASKC
AGAP006591-PA
CCHC ZF
152
169
KRCHNCRSEDHLIADCPT
Links
Other
CCHC ZF,CSD
family RBPs
Other
Anopheles gambiae
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIBMGA000377
Bombyx mori
BGIBMGA000377
N
0.816
AAEL004259
Aedes aegypti
AAEL004259
N
0.786
CpipJ_CPIJ011213
Culex pipiens
CpipJ_CPIJ011213
N
0.769
CPIJ011213
Culex quinquefasciatus
CPIJ011213
N
0.769
estExt_Genewise1Plus.C_550012
Capitella teleta
estExt_Genewise1Plus.C_550012
N
0.712
e_gw1.8.742.1
Lottia gigantea
e_gw1.8.742.1
N
0.702