CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MEX3D
(
Ornithorhynchus anatinus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSOANG00000011764
T19168_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.820
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000018651
KH
72
132
TECVPVPSSEHVAEIVGRQGKPQXXXXAKTNTYIKTPVRGEEPIFIVTGRKEDVEMAKREI
ENSOANP00000018651
KH
167
226
TIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI
Links
Other
KH
family RBPs
Other
Ornithorhynchus anatinus
RBPs
143 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_kg.C_1330010
Phytophthora capsici
estExt_fgenesh1_kg.C_1330010
N
0.000
fgenesh1_pg.C_scaffold_8000198
Phytophthora ramorum
fgenesh1_pg.C_scaffold_8000198
N
0.000
PITG_01591
Phytophthora infestans
PITG_01591
N
0.000
s_468592
Phytophthora sojae
s_468592
N
0.000