CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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s_468592
(
Phytophthora sojae
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
s_468592
T27632_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
s_468592
RanBP ZF
683
712
KPGQWKCPGCSVLNEATSAKCPCCETAKPG
Links
Other
RanBP ZF
family RBPs
Other
Phytophthora sojae
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_8000198
Phytophthora ramorum
fgenesh1_pg.C_scaffold_8000198
N
0.967
fgenesh1_pg.C_scaffold_5000224
Phytophthora ramorum
fgenesh1_pg.C_scaffold_5000224
N
0.967
PITG_01591
Phytophthora infestans
PITG_01591
N
0.933
estExt_fgenesh1_kg.C_1330010
Phytophthora capsici
estExt_fgenesh1_kg.C_1330010
N
0.867