CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HXE2_POPTR
(
Populus trichocarpa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
POPTR_0010s00780
T24429_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s00780.1
PUF
129
163
KMKGKIPEIASSHVSSRVLQTCVKYCTQAERDTVF
POPTR_0010s00780.1
PUF
165
199
ELKPHFLTFATNKYAIHLVMKMLDNASKKQLAEFI
Links
Other
PUF
family RBPs
Other
Populus trichocarpa
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q3SZP6_BOVIN
Bos taurus
ENSBTAG00000034347
N
0.000
Q3SZP6_BOVIN
Bos taurus
ENSBTAG00000034467
N
0.000
RBM11
Callithrix jacchus
ENSCJAG00000003218
N
0.000
Rbm11
Dipodomys ordii
ENSDORG00000000801
N
0.000
LOC100068747
Equus caballus
ENSECAG00000015417
N
0.000
RBM11
Felis catus
ENSFCAG00000018199
N
0.000
RBM11
Homo sapiens
ENSG00000185272
N
0.000
RBM11
Gorilla gorilla
ENSGGOG00000025603
N
0.000
RBM11
Loxodonta africana
ENSLAFG00000007082
N
0.000
RBM11
Myotis lucifugus
ENSMLUG00000005721
N
0.000
RBM11
Macaca mulatta
ENSMMUG00000020089
N
0.000
RBM11
Oryctolagus cuniculus
ENSOCUG00000010409
N
0.000
RBM11
Procavia capensis
ENSPCAG00000008368
N
0.000
ENSPPYG00000011285
Pongo pygmaeus
ENSPPYG00000011285
N
0.000
RBM11
Pan troglodytes
ENSPTRG00000013786
N
0.000
RBM11
Pteropus vampyrus
ENSPVAG00000013858
N
0.000
RBM11
Tupaia belangeri
ENSTBEG00000004121
N
0.000
RBM11
Tursiops truncatus
ENSTTRG00000007410
N
0.000
RBM11
Vicugna pacos
ENSVPAG00000000673
N
0.000