CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HXE2_POPTR
(
Populus trichocarpa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
POPTR_0010s00780
T24429_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s00780.1
PUF
129
163
KMKGKIPEIASSHVSSRVLQTCVKYCTQAERDTVF
POPTR_0010s00780.1
PUF
165
199
ELKPHFLTFATNKYAIHLVMKMLDNASKKQLAEFI
Links
Other
PUF
family RBPs
Other
Populus trichocarpa
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9N014_POPTR
Populus trichocarpa
POPTR_0008s23200
N
0.929
29726.m004103
Ricinus communis
29726.m004103
N
0.886
ppa002599m
Prunus persica
ppa002599m
N
0.800
Glyma17g03290.1
Glycine max
Glyma17g03290.1
N
0.771
Cucsa.069370
Cucumis sativus
Cucsa.069370
N
0.771
Al_scaffold_0769_1
Arabidopsis lyrata
Al_scaffold_0769_1
N
0.700