CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SJAG_04385
(
Schizosaccharomyces japonicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SJAG_04385
T30572_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SJAG_04385T0
RRM
174
244
IVIKNIPFSLEKDSLIECFKKLGIPKPYAFNYHYDNGVFRGLAFANFYMPEEARAVVQALNGYEINGRRLR
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces japonicus
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE007079
Oryza indica
BGIOSIBCE007079
N
0.000
LOC_Os08g23510
Oryza sativa
LOC_Os08g23510
N
0.000
LOC_Os09g09400
Oryza sativa
LOC_Os09g09400
N
0.000
LOC_Os11g24270
Oryza sativa
LOC_Os11g24270
N
0.000
PTTG_10560
Puccinia triticina
PTTG_10560
N
0.000
PTTG_10566
Puccinia triticina
PTTG_10566
N
0.000
PTTG_10569
Puccinia triticina
PTTG_10569
N
0.000