LOC_Os09g09400 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os09g09400 T12106_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os09g09400.1 CCHC ZF 326 342

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

9 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os11g24270 Oryza sativa LOC_Os11g24270 N 1.000
LOC_Os02g29570 Oryza sativa LOC_Os02g29570 N 0.882
BGIOSIBCE007079 Oryza indica BGIOSIBCE007079 N 0.824
PGTG_16926 Puccinia graminis PGTG_16926 N 0.722
PGTG_16818 Puccinia graminis PGTG_16818 N 0.722
PGTG_13838 Puccinia graminis PGTG_13838 N 0.722
PGTG_06776 Puccinia graminis PGTG_06776 N 0.722
LOC_Os08g23510 Oryza sativa LOC_Os08g23510 N 0.706
cassava28473.m1 Manihot esculenta cassava28473.m1 N 0.706