CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRV_04696
(
Trichophyton verrucosum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TRV_04696
T31227_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TRV_04696
RRM
372
434
LFVGGVTSTESHLRSLFSRYGTVQTCIVNNDKRHAFVKMVNRRDAMNAREGMEQYKSGDMQLR
Links
Other
RRM
family RBPs
Other
Trichophyton verrucosum
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_07074
Arthroderma benhamiae
ARB_07074
N
1.000
BDBG_05846
Blastomyces dermatitidis
BDBG_05846
N
0.857
ACLA_000920
Aspergillus clavatus
CADACLAG00000330
N
0.778
AFLA_007030
Aspergillus flavus
CADAFLAG00010766
N
0.778
AFUA_5G04240
Aspergillus fumigatus
CADAFUAG00002869
N
0.825
An09g06700
Aspergillus niger
CADANGAG00008209
N
0.778
ANIA_08276
Aspergillus nidulans
CADANIAG00004336
N
0.810
AO090102000629
Aspergillus oryzae
CADAORAG00009913
N
0.778
ATEG_07989
Aspergillus terreus
CADATEAG00005162
N
0.762
NFIA_037860
Neosartorya fischeri
CADNFIAG00003716
N
0.794
CIMG_06293
Coccidioides immitis
CIMG_06293
N
0.889
CPSG_00779
Coccidioides posadasii
CPSG_00779
N
0.889
fgenesh1_pg.00153_#_263
Aspergillus carbonarius
fgenesh1_pg.00153_#_263
N
0.762
HCAG_11161
Histoplasma capsulatum
HCAG_11161
N
0.873
MCYG_06836
Microsporum canis
MCYG_06836
N
0.952
MGYG_03781
Microsporum gypseum
MGYG_03781
N
0.968
PABG_07318
Paracoccidioides brasiliensis
PABG_07318
N
0.889
Pc12g05410
Penicillium chrysogenum
Pc12g05410
N
0.730
PMAA_095320
Penicillium marneffei
PMAA_095320
N
0.841
TEQG_02925
Trichophyton equinum
TEQG_02925
N
1.000
TERG_04128
Trichophyton rubrum
TERG_04128
N
1.000
UREG_04091
Uncinocarpus reesii
UREG_04091
N
0.873