CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc12g05410
(
Penicillium chrysogenum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pc12g05410
T57960_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc12g05410.t1
RRM
494
556
LFVGGVTSSEAHLRQLFGQFGIVQTCIVNVDKRHAFIKMISRTDAMQARDGMESYRTGDMQLR
Links
Other
RRM
family RBPs
Other
Penicillium chrysogenum
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ATEG_07989
Aspergillus terreus
CADATEAG00005162
N
0.857
AO090102000629
Aspergillus oryzae
CADAORAG00009913
N
0.857
ACLA_000920
Aspergillus clavatus
CADACLAG00000330
N
0.857
AFLA_007030
Aspergillus flavus
CADAFLAG00010766
N
0.857
NFIA_037860
Neosartorya fischeri
CADNFIAG00003716
N
0.857
An09g06700
Aspergillus niger
CADANGAG00008209
N
0.857
fgenesh1_pg.00153_#_263
Aspergillus carbonarius
fgenesh1_pg.00153_#_263
N
0.857
ANIA_08276
Aspergillus nidulans
CADANIAG00004336
N
0.841
AFUA_5G04240
Aspergillus fumigatus
CADAFUAG00002869
N
0.810
BDBG_05846
Blastomyces dermatitidis
BDBG_05846
N
0.778
PMAA_095320
Penicillium marneffei
PMAA_095320
N
0.778
PABG_07318
Paracoccidioides brasiliensis
PABG_07318
N
0.778
CPSG_00779
Coccidioides posadasii
CPSG_00779
N
0.762
HCAG_11161
Histoplasma capsulatum
HCAG_11161
N
0.762
CIMG_06293
Coccidioides immitis
CIMG_06293
N
0.762
MGYG_03781
Microsporum gypseum
MGYG_03781
N
0.746
TERG_04128
Trichophyton rubrum
TERG_04128
N
0.730
ARB_07074
Arthroderma benhamiae
ARB_07074
N
0.730
MCYG_06836
Microsporum canis
MCYG_06836
N
0.730
TEQG_02925
Trichophyton equinum
TEQG_02925
N
0.730
TRV_04696
Trichophyton verrucosum
TRV_04696
N
0.730
UREG_04091
Uncinocarpus reesii
UREG_04091
N
0.730