CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G26210
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI1G26210
T33134_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G26210.1
RRM
116
187
LWIGDLQYWMDEAYLHNAFAPMGPQQVASVKIIRNKQTGQPEGYGFIEFHSRAAAEYALASFNGHAMPNVDL
BRADI1G26210.1
RRM
211
282
IFVGDLASDVTDSMLQEIFKASYPSVRGANVVTDRATGRSKGYGFVRFGDVNEQTRAMTEMNGVTLSSRQLR
BRADI1G26210.1
RRM
322
386
IFVGGLDSNIDENYLRQVFTPYGEVGYVKIPVGKRCGFVQFTSRSCAEEAINALNGTPIGGNNVR
BRADI1G26210.2
RRM
116
187
LWIGDLQYWMDEAYLHNAFAPMGPQQVASVKIIRNKQTGQPEGYGFIEFHSRAAAEYALASFNGHAMPNVDL
BRADI1G26210.2
RRM
211
282
IFVGDLASDVTDSMLQEIFKASYPSVRGANVVTDRATGRSKGYGFVRFGDVNEQTRAMTEMNGVTLSSRQLR
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE024965
Oryza indica
BGIOSIBCE024965
N
0.812
GRMZM2G079974
Zea mays
GRMZM2G079974
N
0.721
GRMZM2G127510
Zea mays
GRMZM2G127510
N
0.738
GRMZM2G169615
Zea mays
GRMZM2G169615
N
0.737
LOC_Os07g33330
Oryza sativa
LOC_Os07g33330
N
0.789