CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G127510
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G127510
T54132_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G127510_P01
RRM
116
188
LWIGDLQHWMDENYLHYNAFAAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLMNFNGQMMPNVEMT
GRMZM2G127510_P01
RRM
211
282
IFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMNGMLLSTRQMR
GRMZM2G127510_P01
RRM
321
385
VFVGGLDSNVNEEYLRQIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIRMLNGSQVGGQKVR
GRMZM2G127510_P02
RRM
116
188
LWIGDLQHWMDENYLHYNAFAAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLMNFNGQMMPNVEMT
GRMZM2G127510_P02
RRM
211
282
IFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMNGMLLSTRQMR
GRMZM2G127510_P02
RRM
321
385
VFVGGLDSNVNEEYLRQIFTPYGEISYVKIPVGKHCGFVQFTSRSCAEEAIRMLNGSQVGGQKVR
GRMZM2G127510_P03
RRM
116
188
LWIGDLQHWMDENYLHYNAFAAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLMNFNGQMMPNVEMT
GRMZM2G127510_P03
RRM
211
282
IFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMNGMLLSTRQMR
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G079974
Zea mays
GRMZM2G079974
N
0.966
GRMZM2G169615
Zea mays
GRMZM2G169615
N
0.914
BRADI1G26210
Brachypodium distachyon
BRADI1G26210
N
0.738
BGIOSIBCE024965
Oryza indica
BGIOSIBCE024965
N
0.733
LOC_Os07g33330
Oryza sativa
LOC_Os07g33330
N
0.729