CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI5G11810
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI5G11810
T33308_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI5G11810.1
RRM
106
174
IWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQTEGYGFVEFYSHASADKALQNFTGHAMPNTD
BRADI5G11810.1
RRM
199
270
IFVGDLAADVTDEMLMELFASKYRSVKGAKVIIDANTGRSRGYGFVRFGEDSDKSRAMTEMNGVYCSTRPIR
BRADI5G11810.1
RRM
300
364
VYVGGLDPNVSEDELRKSFAKYGDVASVKIPQGKQCGFVQYVNRTDAEEALQGLNGSVIGKQAVR
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_15706
Coprinopsis cinerea
CC1G_15706
N
0.000
EuGene10000246
Heterobasidion annosum
EuGene10000246
N
0.000
fgenesh1_pg.C_scaffold_5000405
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_5000405
N
0.000
fgenesh3_pg.136__29
Postia placenta
fgenesh3_pg.136__29
N
0.000
genemark.11015_g
Pleurotus ostreatus
genemark.11015_g
N
0.000