CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AO090005001118
(
Aspergillus oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAORAG00003032
T33674_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAORAP00002985
RRM
180
248
IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEDSVAPAIQLTGQKLLGIPI
CADAORAP00002985
RRM
279
348
LYVGNIHFSITENDLQNVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRAIR
CADAORAP00002985
RRM
493
549
LEDDVRAECEEKYGHVVHIALDPNSQGDIYLKFDRVQGGENAIKGLNGRFFGGKQIT
Links
Other
RRM
family RBPs
Other
Aspergillus oryzae
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNAPOd2T00018093001
Oikopleura dioica
SNAPOd2T00018093001
N
0.000
SNAPOd2T00018901001
Oikopleura dioica
SNAPOd2T00018901001
N
0.000
SNAPOd2T00020450001
Oikopleura dioica
SNAPOd2T00020450001
N
0.000
SNAPOd2T00020451001
Oikopleura dioica
SNAPOd2T00020451001
N
0.000
SNAPOd2T00027516001
Oikopleura dioica
SNAPOd2T00027516001
N
0.000